SHE721
Library SH
(Link to library)
Clone ID SHE721
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SHE721E
(Link to Original site)
Representative DNA sequence
>SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/
ACTGTTGGCCTACTGGTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAG
AAACTGCTCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCAC
CACCAACTCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTA
GATCAGCTCCACCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCAT
CCCATAAGACACCTGCAGCTCCACCATCAGGCGGAGGTGCTCCGCCACCACCACCACCTC
CACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCAT
CATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTA
GTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTG
GTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAG
GTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATT
AAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCATTAAATAAAGATTTCTTA
sequence update 2002.10.27
Translated Amino Acid sequence
CWPTGFQSAGIKKSELKNAETAQFIVNIIGEQMVGGSAPPPTQPGRSAPPAPPSSNQPGR
SAPPPPPSVGKSAPPPPPPSHKTPAAPPSGGGAPPPPPPPPPPSSGPPPPPPPMASAPPS
SGGGGASGGGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRG
GMREDDEEDDDDDDEWSDY*iil*qnsnskkslnkdfl


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvsnllvlrrvn*rmqkllnslsislvnkwlvvqlhhqlnqvdqlhqlhhlqtnqv
dqlhhhhhllvkvlhhhhhhpirhlqlhhqaevlrhhhhlhhhllvvhhlhhhqwpvllh
hqevvvpaaveemifwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lil*lqlwlive
vv*ekmmkkmmmtmmngqiiklffnkiqiqknh*ikis


Frame B:
llaywfpicwy*ee*ikecrncsihcqyhw*tngwwfssttnstr*isstsstifkptr*
isstttticw*kcstttttip*dtcsstirrrcsattttstttf*wsttstttngqcssi
irrwwcqrrwkk*sfgfhs*wcks*gc**nqstprysksw**rftffs*yfscsyg*s*r
wyerr**rr***r**mvrllnysltkfkfkkiik*rfl


Frame C:
CWPTGFQSAGIKKSELKNAETAQFIVNIIGEQMVGGSAPPPTQPGRSAPPAPPSSNQPGR
SAPPPPPSVGKSAPPPPPPSHKTPAAPPSGGGAPPPPPPPPPPSSGPPPPPPPMASAPPS
SGGGGASGGGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRG
GMREDDEEDDDDDDEWSDY*iil*qnsnskkslnkdfl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/ 438 e-122
VSC304 (VSC304Q) /CSM/VS/VSC3-A/VSC304Q.Seq.d/ 406 e-112
VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/ 406 e-112
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/ 402 e-111
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/ 402 e-111
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/ 402 e-111
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/ 402 e-111
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/ 402 e-111
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/ 402 e-111
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/ 402 e-111

own update 2002.12. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds. 406 0.0 5
AC137988|AC137988.2 Trypanosoma cruzi chromosome 3 clone cosmids 1o17, 1m17, 1b21, 2n11 strain Brener, complete sequence. 32 2e-04 3
CV528119| phenoloxidase activating factor - Callinectes sapidus. Score = 140 bits (354), Expect = 2e-32, mRNA sequence. 32 0.001 3
AC025722|AC025722.2 Caenorhabditis elegans cosmid Y50D4C, complete sequence. 38 0.003 2
AF535160|AF535160.1 Caenorhabditis elegans UNC-34 (unc-34) mRNA, complete cds. 38 0.003 2
CV125485|CV125485.1 OSTF30040G06 pDONR201 Entry vector Caenorhabditis elegans cDNA, mRNA sequence. 38 0.003 2
AC096105|AC096105.5 Rattus norvegicus clone CH230-27K5, WORKING DRAFT SEQUENCE, 1 ordered piece. 30 0.008 3
AC096084|AC096084.9 Rattus norvegicus clone CH230-16I22, WORKING DRAFT SEQUENCE, 6 unordered pieces. 38 0.010 2
AC121186|AC121186.4 Rattus norvegicus clone CH230-331A2, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.010 2
AC113578|AC113578.1 Tetraodon nigroviridis clone GSTNA-25D21, WORKING DRAFT SEQUENCE, 1 unordered piece. 38 0.011 2
dna update 2006. 3. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A... 83 8e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso... 44 0.005

protein update 2008.11.16
PSORT

psg: 0.84 gvh: 0.41 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SHE721 is cyt

5' end seq. ID SHE721F
5' end seq.
>SHE721F.Seq
ACTGTTGGCCTACTGGTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAG
AAACTGCTCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCAC
CACCAACTCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTA
GATCAGCTCCACCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCAT
CCCATAAGACACCTGCAGCTCCACCATCAGGCGGAGGTGCTCCGCCACCACCACCACCTC
CACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCAT
CATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTA
GTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTG
GTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAG
GTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATT
AAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCATTAAATAAAGATNNNNNNNNNN
Length of 5' end seq. 660
3' end seq. ID SHE721Z
3' end seq.
>SHE721Z.Seq
NNNNNNNNNNTTTCCAATNTGNTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAANTG
CTCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAA
CTCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAG
CTCCACCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCATCCCATA
AGACACCTGCAGCTCCACCATCAGGCGGAGGTGCTCCGCCACCACCACCACCTCCACCAC
CACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAG
GAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTG
CAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATG
AAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTA
TGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAAGGTCAGATTATTAAATTAT
TCTTTAACAAAATTCAAATTCAAAAAAATCATNAATAAAGATTTCTTA
Length of 3' end seq. 648
Connected seq. ID SHE721P
Connected seq.
>SHE721P.Seq
ACTGTTGGCCTACTGGTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAG
AAACTGCTCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCAC
CACCAACTCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTA
GATCAGCTCCACCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCAT
CCCATAAGACACCTGCAGCTCCACCATCAGGCGGAGGTGCTCCGCCACCACCACCACCTC
CACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCAT
CATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTA
GTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTG
GTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAG
GTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATT
AAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCATTAAATAAAGAT----------
TTTCCAATNTGNTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAANTGCTCAATTCAT
TGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAACTCAACCAGG
TAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAGCTCCACCACC
ACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCATCCCATAAGACACCTGC
AGCTCCACCATCAGGCGGAGGTGCTCCGCCACCACCACCACCTCCACCACCACCTTCTAG
TGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGG
TGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAA
GGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACG
TTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGA
TGATGAAGAAGATGATGATGACGATGATGAAGGTCAGATTATTAAATTATTCTTTAACAA
AATTCAAATTCAAAAAAATCATNAATAAAGATTTCTTA
Length of connected seq. 1288
Full length Seq ID SHE721E
Full length Seq.
>SHE721E.Seq
ACTGTTGGCCTACTGGTTTCCAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAG
AAACTGCTCAATTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCAC
CACCAACTCAACCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTA
GATCAGCTCCACCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCAT
CCCATAAGACACCTGCAGCTCCACCATCAGGCGGAGGTGCTCCGCCACCACCACCACCTC
CACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCAT
CATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTA
GTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTG
GTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAG
GTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATT
AAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCATTAAATAAAGATTTCTTA
Length of full length seq. 656