SHE701
Library SH
(Link to library)
Clone ID SHE701
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14582-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHE701 (SHE701Q) /CSM/SH/SHE7-A/SHE701Q.Seq.d/
CCCAAAAAAAACCNTTTTTTTTTTTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTNNNNTTTTTTAAAAAAAAAAXXXXXXX
XXX
sequence update 2002.10.25
Translated Amino Acid sequence
PKKTXFFFXKKKKKKKKKKKKKKKKKKKKIXXFFKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
pkknxffflxkkkkkkkkkkkkkkkkkkknfxxf*kk---


Frame B:
PKKTXFFFXKKKKKKKKKKKKKKKKKKKKIXXFFKKK---


Frame C:
qkkpffffxkkkkkkkkkkkkkkkkkkkkfxxflkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHE859 (SHE859Q) /CSM/SH/SHE8-C/SHE859Q.Seq.d/ 48 3e-05
SHE701 (SHE701Q) /CSM/SH/SHE7-A/SHE701Q.Seq.d/ 48 3e-05
CHK751 (CHK751Q) /CSM/CH/CHK7-C/CHK751Q.Seq.d/ 48 3e-05
CHK658 (CHK658Q) /CSM/CH/CHK6-C/CHK658Q.Seq.d/ 48 3e-05
CHK283 (CHK283Q) /CSM/CH/CHK2-D/CHK283Q.Seq.d/ 48 3e-05
CHI732 (CHI732Q) /CSM/CH/CHI7-B/CHI732Q.Seq.d/ 48 3e-05
CHO723 (CHO723Q) /CSM/CH/CHO7-A/CHO723Q.Seq.d/ 46 1e-04
SHH521 (SHH521Q) /CSM/SH/SHH5-A/SHH521Q.Seq.d/ 42 0.002
SHH210 (SHH210Q) /CSM/SH/SHH2-A/SHH210Q.Seq.d/ 42 0.002
SHD522 (SHD522Q) /CSM/SH/SHD5-A/SHD522Q.Seq.d/ 42 0.002

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CC056172|CC056172.1 SALK_100745.53.75.x Arabidopsis thaliana TDNA insertion linessurvey sequence. 48 0.040 1
DV856046|DV856046.1 col3306 Colonial bentgrass EST Agrostis capillaris cDNA clone COL380T_D11 3', mRNA sequence. 46 0.16 1
DR777140|DR777140.1 BAAC-PNP1253G19.g1 C.remanei EST SB146 Caenorhabditis remanei cDNA 5, mRNA sequence. 46 0.16 1
DN878115|DN878115.1 nae18e02.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) Canis familiaris cDNA clone nae18e02 3', mRNA sequence. 46 0.16 1
DN986782|DN986782.1 MSU_2F_2-II_02_MSU_2F_2-II_02_C09.ab1 Bermudagrass cv. MSU subtracted cold acclimated cDNA library Cynodon dactylon cDNA clone MSU_2F_2-II_02_MSU_2F_2-II_02_C09.ab1, mRNA sequence. 46 0.16 1
DN808505|DN808505.1 76876035 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-66E10 3', mRNA sequence. 46 0.16 1
DN568269|DN568269.1 93835860 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-145H12 3', mRNA sequence. 46 0.16 1
CO091986|CO091986.1 GR__Ea12M04.r GR__Ea Gossypium raimondii cDNA clone GR__Ea12M04 3', mRNA sequence. 46 0.16 1
CO087536|CO087536.1 GR__Ea06A17.r GR__Ea Gossypium raimondii cDNA clone GR__Ea06A17 3', mRNA sequence. 46 0.16 1
CK230025|CK230025.1 ILLUMIGEN_MCQ_295 Katze_MMPL2 Macaca mulatta cDNA 5' similar to human SERPINE2 (Hs.21858), mRNA sequence. 46 0.16 1
dna update 2006. 3. 7
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 14,886,492
protein update 2009. 4.17
PSORT

psg: 0.03 gvh: -0.20 alm: 0.91 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 2.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SHE701 is nuc

5' end seq. ID SHE701F
5' end seq.
>SHE701F.Seq
CCCAAAAAAAACCNTTTTTTTTTTTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTNNNNTTTTTTAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 123
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -