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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE695
Library SH
(Link to library)
Clone ID SHE695
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12072-1
Original site URL
Representative seq. ID SHE695P
(Link to Original site)
Representative DNA sequence 
>SHE695 (SHE695Q) /CSM/SH/SHE6-D/SHE695Q.Seq.d/
CACTGTTGGCCTACTGGTACATCTAACAGTTGATTATGATCCTAATTTACAAAATGGTAC
TCAAATTAAAATTTTTCAATGTCTAAACGGTTGCAGTAATCATGGNATTATGTATTTCAA
GAACTGGATCTTGTGATTGTTATGAAGGATATGGAGGTATTGATTGTTCATCTATAGTCG
TTTCATTAATTTGTCCATCTAATGATTCTAGTCTTATTTGTAGTGGATTTGGTATATGTG
ATAAAAAGACAGGTGTATGTGCATGTGGTACTGGTAGAACAGGTAATGATTGTAGTGAAA
CTGCATGTCCAATATCAGATTGTAGTGATCATGGTTATTGTGATACTAGTATTGGTAAAT
GTAATTGTGATTCTTCTCATCAAGGAGCTGGTTGTGAAATGGATTTAGTTTCATGTCCAA
CTTCAAATAAAGCAATTTGTAGTGGATGGGGCACATGTAATAATCAAACTGGTATTTGTA
CTTGTGATGCTAATAGAGTAGGTAGTGATTGTAGTGGTATTTCATGTCCAGTACCAAACT
GTAATGGAAATGGTAATTGTGATACCACTGTAGGTCAATGTAGTTGTGATCCATCTCATC
AGGGAGCTAATTGTGAAATGAATTTTGTTTCATGTCCAACGCCAAATAGGTCAGTTTGTA
GTGGATGGGGTACATGTAATAATCAAACTGGTATTTGTACTTGTGATGCTAATANAGTAN
GTAGTGATTGNAGNGGTATTGCATGTCCAGTATCCGGATTGCANTGGACATGGCTATTGG
GATACCACTATAGGNCATGTAATTGNGATTCTTNTCXXXXXXXXXXAAATATACATTTGC
AGGTATGAATTTAGAAATTGATCAAGGTGGTTTAAAAATTTCAGTTTCAATTAAAAATTA
TCAATATGAAAGTGCCCTAAATACATTACAATTAAGATTTTTATCATCTGCAGGTGAAAC
ATCAAATCTTGATAGTGAAGAAGATAACTCTTGTAATCAACATGAATCTGAATCTGAATC
CTCAAATATTGATCCAAATTTAACATTAAATTACATTTCAATTTCAAAGAATTCAAAAAT
TTTAAGTGGTAGATTCATTAATAAAGTTGTATCTGATGGAAGATCAACTTTTATGTCTAG
TGAAATTGTTAAAGATTTATCTTCATCTTCTACAATTGTTGTTGGTTTAAATTTACCACA
TTGTTCAAATGAATGTTTTATTGATCCAGATTTCTCTGTTTTAGTATCTCCAAACTTTGA
ATCATCTTGTGGTAATTCAGAAACAAAAAAAAATTGGGTAATTCCAGTTGCTGTTGTTGT
ACCAGTTGTTTGTGTTTCACTTCTCACATTAGGTGCTATTTTAATTTATAGAAAACATAG
ATATTCCATTAGATTATTTACAATNAAAAAATCATTCTCTGTAAAACAACGTTTTAAACT
TAGAAGTTTTAAATAAAATAAAATATNAATTGTAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywyi*qlimiliykmvlklkffnv*TVAVIMXLCISRTGSCDCYEGYGGIDCSSIVV
SLICPSNDSSLICSGFGICDKKTGVCACGTGRTGNDCSETACPISDCSDHGYCDTSIGKC
NCDSSHQGAGCEMDLVSCPTSNKAICSGWGTCNNQTGICTCDANRVGSDCSGISCPVPNC
NGNGNCDTTVGQCSCDPSHQGANCEMNFVSCPTPNRSVCSGWGTCNNQTGICTCDANXVX
SDXXGIACPVSGLXWTWLLGYHYRXCNXDSX---

---KYTFAGMNLEIDQGGLKISVSIKNYQYESALNTLQLRFLSSAGETSNLDSEEDNSCN
QHESESESSNIDPNLTLNYISISKNSKILSGRFINKVVSDGRSTFMSSEIVKDLSSSSTI
VVGLNLPHCSNECFIDPDFSVLVSPNFESSCGNSETKKNWVIPVAVVVPVVCVSLLTLGA
ILIYRKHRYSIRLFTXKKSFSVKQRFKLRSFK*nkixiv
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgtsns*l*s*ftkwysn*nfsmskrlq*swxyvfqeldlvivmkdmevlivhl*s
fh*fvhlmilvlfvvdlvyvikrqvyvhvvlveqvmivvklhvqyqivvimvivilvlvn
vivillikelvvkwi*fhvqlqikqfvvdgahviiklvfvlvmlie*vvivvvfhvqyqt
vmemvivipl*vnvvvihlirelivk*ilfhvqrqigqfvvdgvhviiklvfvlvmlixx
vvixxvlhvqypdcxghgywdttighvixilx---

---KYTFAGMNLEIDQGGLKISVSIKNYQYESALNTLQLRFLSSAGETSNLDSEEDNSCN
QHESESESSNIDPNLTLNYISISKNSKILSGRFINKVVSDGRSTFMSSEIVKDLSSSSTI
VVGLNLPHCSNECFIDPDFSVLVSPNFESSCGNSETKKNWVIPVAVVVPVVCVSLLTLGA
ILIYRKHRYSIRLFTXKKSFSVKQRFKLRSFK*nkixiv

Frame B:
tvgllvhltvdydpnlqngtqikifqclngcsnhgimyfknwil*ll*riwry*lfiysr
finlsi**f*syl*wiwym**kdrcmcmwyw*nr**l**ncmsnirl**swll*y*yw*m
*l*ffssrswl*ngfsfmsnfk*snl*wmghm**snwylyl*c**sr**l*wyfmsstkl
*wkw*l*yhcrsm*l*sissgs*l*nefcfmsnak*vsl*wmgym**snwylyl*c*xsx
**lxxycmssiriaxdmaigipl*xm*lxfx---

---nihlqv*i*klikvv*kfqfqlkiinmkvp*ihyn*dfyhlqvkhqilivkkitlvi
nmnlnlnpqiliqi*h*itfqfqriqkf*vvdsliklylmedqllclvkllkiylhllql
llv*iyhivqmnvlliqislf*ylqtlnhlvviqkqkkig*fqllllyqlfvfhfsh*vl
f*fienidipldylqxknhsl*nnvlnlevlnkikyxl*

Frame C:
llaywyi*qlimiliykmvlklkffnv*TVAVIMXLCISRTGSCDCYEGYGGIDCSSIVV
SLICPSNDSSLICSGFGICDKKTGVCACGTGRTGNDCSETACPISDCSDHGYCDTSIGKC
NCDSSHQGAGCEMDLVSCPTSNKAICSGWGTCNNQTGICTCDANRVGSDCSGISCPVPNC
NGNGNCDTTVGQCSCDPSHQGANCEMNFVSCPTPNRSVCSGWGTCNNQTGICTCDANXVX
SDXXGIACPVSGLXWTWLLGYHYRXCNXDSX---

---iyicryefrn*srwfknfsfn*klsi*kcpkyitikifiicr*niks***rr*ll*s
t*i*i*ilky*skfniklhfnfkefknfkw*ih**sci*wkinfyv**nc*rfififync
cwfkfttlfk*mfy*srflcfsiskl*iilw*frnkkklgnsscccctsclcftshircy
fnl*kt*ifh*iiynxkiilckttf*t*kf*ik*nxncn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE695 (SHE695Q) /CSM/SH/SHE6-D/SHE695Q.Seq.d/                       2712   0.0
FC-IC0127 (FC-IC0127Q) /CSM/FC-IC/FC-IC0127Q.Seq.d/                   837   0.0
SHD523 (SHD523Q) /CSM/SH/SHD5-A/SHD523Q.Seq.d/                         80   1e-13
VHH237 (VHH237Q) /CSM/VH/VHH2-B/VHH237Q.Seq.d/                         74   7e-12
VHG284 (VHG284Q) /CSM/VH/VHG2-D/VHG284Q.Seq.d/                         74   7e-12
VHA317 (VHA317Q) /CSM/VH/VHA3-A/VHA317Q.Seq.d/                         74   7e-12
CHM677 (CHM677Q) /CSM/CH/CHM6-D/CHM677Q.Seq.d/                         64   7e-09
SHG715 (SHG715Q) /CSM/SH/SHG7-A/SHG715Q.Seq.d/                         62   3e-08
SSG785 (SSG785Q) /CSM/SS/SSG7-D/SSG785Q.Seq.d/                         60   1e-07
VHK233 (VHK233Q) /CSM/VH/VHK2-B/VHK233Q.Seq.d/                         58   4e-07
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.  1261   0.0    3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    64   1e-22  15
AC116967|AC116967.2 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4, complete sequence.    66   1e-19  6
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    50   4e-17  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    66   1e-15  10
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    52   4e-10  8
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    52   2e-05  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    42   0.002  2
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   0.006  16
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.028  8
dna update 2006. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...   457   e-141
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...   237   7e-61
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...   170   1e-40
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...   163   2e-38
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   162   4e-38
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...   160   1e-37
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...   157   7e-37
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...   147   7e-34
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...   144   8e-33
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...   144   1e-32
protein update 2009. 4.17
PSORT 

 psg: 0.95  gvh: 0.61  alm: 0.18  top: 0.97  tms: 0.07  mit: 0.29  mip: 0.03
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.01  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHE695 is cyt
5' end seq. ID SHE695F
5' end seq. 
>SHE695F.Seq
CACTGTTGGCCTACTGGTACATCTAACAGTTGATTATGATCCTAATTTACAAAATGGTAC
TCAAATTAAAATTTTTCAATGTCTAAACGGTTGCAGTAATCATGGNATTATGTATTTCAA
GAACTGGATCTTGTGATTGTTATGAAGGATATGGAGGTATTGATTGTTCATCTATAGTCG
TTTCATTAATTTGTCCATCTAATGATTCTAGTCTTATTTGTAGTGGATTTGGTATATGTG
ATAAAAAGACAGGTGTATGTGCATGTGGTACTGGTAGAACAGGTAATGATTGTAGTGAAA
CTGCATGTCCAATATCAGATTGTAGTGATCATGGTTATTGTGATACTAGTATTGGTAAAT
GTAATTGTGATTCTTCTCATCAAGGAGCTGGTTGTGAAATGGATTTAGTTTCATGTCCAA
CTTCAAATAAAGCAATTTGTAGTGGATGGGGCACATGTAATAATCAAACTGGTATTTGTA
CTTGTGATGCTAATAGAGTAGGTAGTGATTGTAGTGGTATTTCATGTCCAGTACCAAACT
GTAATGGAAATGGTAATTGTGATACCACTGTAGGTCAATGTAGTTGTGATCCATCTCATC
AGGGAGCTAATTGTGAAATGAATTTTGTTTCATGTCCAACGCCAAATAGGTCAGTTTGTA
GTGGATGGGGTACATGTAATAATCAAACTGGTATTTGTACTTGTGATGCTAATANAGTAN
GTAGTGATTGNAGNGGTATTGCATGTCCAGTATCCGGATTGCANTGGACATGGCTATTGG
GATACCACTATAGGNCATGTAATTGNGATTCTTNTCNNNNNNNNNN
Length of 5' end seq. 826
3' end seq. ID SHE695Z
3' end seq. 
>SHE695Z.Seq
NNNNNNNNNNAAATATACATTTGCAGGTATGAATTTAGAAATTGATCAAGGTGGTTTAAA
AATTTCAGTTTCAATTAAAAATTATCAATATGAAAGTGCCCTAAATACATTACAATTAAG
ATTTTTATCATCTGCAGGTGAAACATCAAATCTTGATAGTGAAGAAGATAACTCTTGTAA
TCAACATGAATCTGAATCTGAATCCTCAAATATTGATCCAAATTTAACATTAAATTACAT
TTCAATTTCAAAGAATTCAAAAATTTTAAGTGGTAGATTCATTAATAAAGTTGTATCTGA
TGGAAGATCAACTTTTATGTCTAGTGAAATTGTTAAAGATTTATCTTCATCTTCTACAAT
TGTTGTTGGTTTAAATTTACCACATTGTTCAAATGAATGTTTTATTGATCCAGATTTCTC
TGTTTTAGTATCTCCAAACTTTGAATCATCTTGTGGTAATTCAGAAACAAAAAAAAATTG
GGTAATTCCAGTTGCTGTTGTTGTACCAGTTGTTTGTGTTTCACTTCTCACATTAGGTGC
TATTTTAATTTATAGAAAACATAGATATTCCATTAGATTATTTACAATNAAAAAATCATT
CTCTGTAAAACAACGTTTTAAACTTAGAAGTTTTAAATAAAATAAAATATNAATTGTAAT
Length of 3' end seq. 660
Connected seq. ID SHE695P
Connected seq. 
>SHE695P.Seq
CACTGTTGGCCTACTGGTACATCTAACAGTTGATTATGATCCTAATTTACAAAATGGTAC
TCAAATTAAAATTTTTCAATGTCTAAACGGTTGCAGTAATCATGGNATTATGTATTTCAA
GAACTGGATCTTGTGATTGTTATGAAGGATATGGAGGTATTGATTGTTCATCTATAGTCG
TTTCATTAATTTGTCCATCTAATGATTCTAGTCTTATTTGTAGTGGATTTGGTATATGTG
ATAAAAAGACAGGTGTATGTGCATGTGGTACTGGTAGAACAGGTAATGATTGTAGTGAAA
CTGCATGTCCAATATCAGATTGTAGTGATCATGGTTATTGTGATACTAGTATTGGTAAAT
GTAATTGTGATTCTTCTCATCAAGGAGCTGGTTGTGAAATGGATTTAGTTTCATGTCCAA
CTTCAAATAAAGCAATTTGTAGTGGATGGGGCACATGTAATAATCAAACTGGTATTTGTA
CTTGTGATGCTAATAGAGTAGGTAGTGATTGTAGTGGTATTTCATGTCCAGTACCAAACT
GTAATGGAAATGGTAATTGTGATACCACTGTAGGTCAATGTAGTTGTGATCCATCTCATC
AGGGAGCTAATTGTGAAATGAATTTTGTTTCATGTCCAACGCCAAATAGGTCAGTTTGTA
GTGGATGGGGTACATGTAATAATCAAACTGGTATTTGTACTTGTGATGCTAATANAGTAN
GTAGTGATTGNAGNGGTATTGCATGTCCAGTATCCGGATTGCANTGGACATGGCTATTGG
GATACCACTATAGGNCATGTAATTGNGATTCTTNTC----------AAATATACATTTGC
AGGTATGAATTTAGAAATTGATCAAGGTGGTTTAAAAATTTCAGTTTCAATTAAAAATTA
TCAATATGAAAGTGCCCTAAATACATTACAATTAAGATTTTTATCATCTGCAGGTGAAAC
ATCAAATCTTGATAGTGAAGAAGATAACTCTTGTAATCAACATGAATCTGAATCTGAATC
CTCAAATATTGATCCAAATTTAACATTAAATTACATTTCAATTTCAAAGAATTCAAAAAT
TTTAAGTGGTAGATTCATTAATAAAGTTGTATCTGATGGAAGATCAACTTTTATGTCTAG
TGAAATTGTTAAAGATTTATCTTCATCTTCTACAATTGTTGTTGGTTTAAATTTACCACA
TTGTTCAAATGAATGTTTTATTGATCCAGATTTCTCTGTTTTAGTATCTCCAAACTTTGA
ATCATCTTGTGGTAATTCAGAAACAAAAAAAAATTGGGTAATTCCAGTTGCTGTTGTTGT
ACCAGTTGTTTGTGTTTCACTTCTCACATTAGGTGCTATTTTAATTTATAGAAAACATAG
ATATTCCATTAGATTATTTACAATNAAAAAATCATTCTCTGTAAAACAACGTTTTAAACT
TAGAAGTTTTAAATAAAATAAAATATNAATTGTAAT
Length of connected seq. 1466
Full length Seq ID -
Full length Seq. -
Length of full length seq. -