SHE655
Library SH
(Link to library)
Clone ID SHE655
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1
Original site URL
Representative seq. ID SHE655P
(Link to Original site)
Representative DNA sequence
>SHE655 (SHE655Q) /CSM/SH/SHE6-C/SHE655Q.Seq.d/
CTGTTGGCCTACTGGNAATATAAATTATTTGTATATAATCAAACTATAGNAGNATCAATA
GTAATTTAACATAAAAAAAATAAAAAAATAAAAAAAATAAAAATAAAAAAGNAAAAAATA
AAAAAGAAAAAAGAAAAAAAAAAXXXXXXXXXXTGATAAAACTACTGATGGTGGTGATCA
TCAAGATGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAA
TAGTACTGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTC
AAGTACAACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTNTCAATC
ATCCACTCCAAATAAACAACAACTACCTCCACCACCACCACAACAAACAAAGAAAACCCA
AATGGTATNTCATTTCATGCCAACTGATGAATGGTTACAAGATATTAAAAAACAATTACC
ATTAGATAATATNTTAAAAGTTATAACTCATTTATCACCACAAATTCAAGGTTTATGCAC
TGGTTCGGGATNTGACGAACAAAAAATCATGGACTACTTGAAAATGTCAACAATTGTTGG
CATTTTCCATAACCCAGGTCCAATAANGACTCGTCGTTATCATTCAAATGCTATTACAAA
ATNTTGGTTCATTGCATACATGTGGTGTATCATTTATTTAGAAAATCATTCACCTCCATT
ATTCCTTCACACAAATATTAAATTATTCCAAGTTAACAATAAAAATAAAAAAGAAAAAAA
AGAAATAAAGAAAAAAAAAATTTTAATAAAGTAATAAATTCAAT
sequence update 2002.10.25
Translated Amino Acid sequence
llaywxyklfvynqtixxsivi*HKKNKKIKKIKIKKXKIKKKKEKK---

---DKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQES
PKLGGDGIDXQSSTPNKQQLPPPPPQQTKKTQMVXHFMPTDEWLQDIKKQLPLDNXLKVI
THLSPQIQGLCTGSGXDEQKIMDYLKMSTIVGIFHNPGPIXTRRYHSNAITKXWFIAYMW
CIIYLENHSPPLFLHTNIKLFQVNNKNKKEKKEIKKKKILIK**iq


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxyklfvynqtixxsivi*HKKNKKIKKIKIKKXKIKKKKEKK---

---**ny*ww*ssr*infkvkgsk*tny*tsk*ywcntilnkfrntnyqsffkyntksri
tkigw*wyrlsiihsk*ttttstttttnkenpngxsfhan**mvtry*ktitir*yxksy
nsfittnsrfmhwfgx*rtknhgllenvnncwhfp*prsnxdsslsfkcyykxlvhcihv
vyhlfrksftsiipshky*iips*q*k*krkkrnkekknfnkvins

Frame B:
cwptgninylyiikl*xxq**fnikkikk*kk*k*kxkk*krkkkkk---

---DKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQES
PKLGGDGIDXQSSTPNKQQLPPPPPQQTKKTQMVXHFMPTDEWLQDIKKQLPLDNXLKVI
THLSPQIQGLCTGSGXDEQKIMDYLKMSTIVGIFHNPGPIXTRRYHSNAITKXWFIAYMW
CIIYLENHSPPLFLHTNIKLFQVNNKNKKEKKEIKKKKILIK**iq

Frame C:
vgllxi*iici*snyxxinsnlt*kk*knkknknkkxknkkekrkkk---

---ikllmvviikmnqfqsqrfkvnqllniqivlvqhhpqqiqehqlsklfqvqhqiknh
qnwvvmv*txnhplqinnnylhhhhnkqrkpkwyxiscqlmngykilknnyh*iix*kl*
liyhhkfkvyalvrdxtnkkswtt*kcqqllafsitqvq*xlvviiqmllqnxgslhtcg
vsfi*kiihlhysftqilnyskltikikkkkkk*rkkkf**snkfn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHE655 (SHE655Q) /CSM/SH/SHE6-C/SHE655Q.Seq.d/ 1168 0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/ 1160 0.0
SHH382 (SHH382Q) /CSM/SH/SHH3-D/SHH382Q.Seq.d/ 1160 0.0
SHD882 (SHD882Q) /CSM/SH/SHD8-D/SHD882Q.Seq.d/ 1160 0.0
SHD356 (SHD356Q) /CSM/SH/SHD3-C/SHD356Q.Seq.d/ 1160 0.0
SHC617 (SHC617Q) /CSM/SH/SHC6-A/SHC617Q.Seq.d/ 1160 0.0
CHQ792 (CHQ792Q) /CSM/CH/CHQ7-D/CHQ792Q.Seq.d/ 1160 0.0
CHM661 (CHM661Q) /CSM/CH/CHM6-C/CHM661Q.Seq.d/ 1160 0.0
CHI878 (CHI878Q) /CSM/CH/CHI8-D/CHI878Q.Seq.d/ 1160 0.0
CHI857 (CHI857Q) /CSM/CH/CHI8-C/CHI857Q.Seq.d/ 1160 0.0

own update 2004. 5.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC124060|AC124060.3 Homo sapiens chromosome 8 clone RP11-65D13 map 8, WORKING DRAFT SEQUENCE. 50 7e-05 2
AC139351|AC139351.4 Mus musculus BAC clone RP24-156K15 from 8, complete sequence. 56 0.001 1
DE283369|DE283369.1 Oryzias latipes DNA, clone: ola1-242I19.F, genomic survey sequence. 54 0.005 1
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence. 54 0.005 1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence. 54 0.005 1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence. 54 0.005 1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence. 54 0.005 1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence. 54 0.005 1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence. 54 0.005 1
AC027286|AC027286.14 Homo sapiens chromosome 3 clone RP11-329I19, WORKING DRAFT SEQUENCE, 19 unordered pieces. 52 0.020 1
dna update 2006. 3. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr... 96 1e-18
AB171620_1(AB171620|pid:none) Macaca fascicularis brain cDNA clo... 96 1e-18
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI... 95 3e-18
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A... 95 3e-18
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet... 95 3e-18
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho... 95 3e-18
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ... 95 3e-18
AK050531_1(AK050531|pid:none) Mus musculus adult pancreas islet ... 95 3e-18
BC150166_1(BC150166|pid:none) Xenopus laevis hypothetical protei... 93 9e-18
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA... 93 9e-18
protein update 2009. 4.17
PSORT

psg: 0.36 gvh: 0.22 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.31 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SHE655 is nuc

5' end seq. ID SHE655F
5' end seq.
>SHE655F.Seq
CTGTTGGCCTACTGGNAATATAAATTATTTGTATATAATCAAACTATAGNAGNATCAATA
GTAATTTAACATAAAAAAAATAAAAAAATAAAAAAAATAAAAATAAAAAAGNAAAAAATA
AAAAAGAAAAAAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 153
3' end seq. ID SHE655Z
3' end seq.
>SHE655Z.Seq
NNNNNNNNNNTGATAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGT
CAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACCATCCT
CAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAAT
CACCAAAATTGGGTGGTGATGGTATAGACTNTCAATCATCCACTCCAAATAAACAACAAC
TACCTCCACCACCACCACAACAAACAAAGAAAACCCAAATGGTATNTCATTTCATGCCAA
CTGATGAATGGTTACAAGATATTAAAAAACAATTACCATTAGATAATATNTTAAAAGTTA
TAACTCATTTATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATNTGACGAACAAA
AAATCATGGACTACTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAA
TAANGACTCGTCGTTATCATTCAAATGCTATTACAAAATNTTGGTTCATTGCATACATGT
GGTGTATCATTTATTTAGAAAATCATTCACCTCCATTATTCCTTCACACAAATATTAAAT
TATTCCAAGTTAACAATAAAAATAAAAAAGAAAAAAAAGAAATAAAGAAAAAAAAAATTT
TAATAAAGTAATAAATTCAAT
Length of 3' end seq. 681
Connected seq. ID SHE655P
Connected seq.
>SHE655P.Seq
CTGTTGGCCTACTGGNAATATAAATTATTTGTATATAATCAAACTATAGNAGNATCAATA
GTAATTTAACATAAAAAAAATAAAAAAATAAAAAAAATAAAAATAAAAAAGNAAAAAATA
AAAAAGAAAAAAGAAAAAAAAAA----------TGATAAAACTACTGATGGTGGTGATCA
TCAAGATGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAA
TAGTACTGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTC
AAGTACAACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTNTCAATC
ATCCACTCCAAATAAACAACAACTACCTCCACCACCACCACAACAAACAAAGAAAACCCA
AATGGTATNTCATTTCATGCCAACTGATGAATGGTTACAAGATATTAAAAAACAATTACC
ATTAGATAATATNTTAAAAGTTATAACTCATTTATCACCACAAATTCAAGGTTTATGCAC
TGGTTCGGGATNTGACGAACAAAAAATCATGGACTACTTGAAAATGTCAACAATTGTTGG
CATTTTCCATAACCCAGGTCCAATAANGACTCGTCGTTATCATTCAAATGCTATTACAAA
ATNTTGGTTCATTGCATACATGTGGTGTATCATTTATTTAGAAAATCATTCACCTCCATT
ATTCCTTCACACAAATATTAAATTATTCCAAGTTAACAATAAAAATAAAAAAGAAAAAAA
AGAAATAAAGAAAAAAAAAATTTTAATAAAGTAATAAATTCAAT
Length of connected seq. 814
Full length Seq ID -
Full length Seq. -
Length of full length seq. -