>SHE620 (SHE620Q) /CSM/SH/SHE6-A/SHE620Q.Seq.d/
CACTGTTGGCCTACTGGAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAAXXXXXXXXXXAGAGAATGAAGAAAGACCATTTTTCAAATAAAAATTTACAAC
AACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAA
ATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATC
AACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAA
AAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATG
AGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATA
TTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAAC
AATTATTAGAACAAGAACAAAATCAAAAANATTNATCATTCTTTCTTTTNAAAAAC

tvglleiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---RMKKDHFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKK
QKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHX
QQIQEQQDKLNQEKNQQLLEQEQNQKXXSFFLXKN

Frame A:
hcwptgnnkftik*lfflfflfkv*iieiikinikkker*kk---

---re*rktifqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkr
nkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnx
nnksknnkin*ikkkinny*nknkikxixhsffxk

Frame B:
tvglleiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---eneerpffk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstke
tknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkystx
ttnprttr*iksrkkstiirtrtkskxxiilsfxk

Frame C:
llaywk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---RMKKDHFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKK
QKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHX
QQIQEQQDKLNQEKNQQLLEQEQNQKXXSFFLXKN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        511   e-144
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        511   e-144
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        511   e-144
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        511   e-144
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        511   e-144
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        511   e-144
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        511   e-144
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        511   e-144
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        511   e-144
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        511   e-144

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   511   e-169  5
CJ480477|CJ480477.1 Macaca fascicularis mRNA, clone: QtrA-15977, 5' end, expressed in brain temporal lobe.    52   0.014  1
CJ442149|CJ442149.1 Macaca fascicularis mRNA, clone: QccE-19650, 5' end, expressed in cerebellum cortex.    50   0.056  1
AC167088|AC167088.2 Sorex araneus clone SA_Ba-114B13, WORKING DRAFT SEQUENCE, 5 ordered pieces.    40   0.16   5
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   0.17   6
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.22   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.22   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.22   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.22   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.22   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   117   2e-25
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   1.9
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   4.3
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   5.6
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   5.6
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   5.6
AE001272_3(AE001272|pid:none) Lactococcus lactis DPC3147 plasmid...    33   5.6
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   7.3
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   7.3
AP009049_1790(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    32   9.5

 psg: 0.30  gvh: 0.11  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHE620 is nuc

>SHE620F.Seq
CACTGTTGGCCTACTGGAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAANNNNNNNNNN

>SHE620Z.Seq
NNNNNNNNNNAGAGAATGAAGAAAGACCATTTTTCAAATAAAAATTTACAACAACTTAAT
GAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAA
CAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAG
AAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAA
CTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTA
GTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACAT
NAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTA
GAACAAGAACAAAATCAAAAANATTNATCATTCTTTCTTTTNAAAAAC

>SHE620P.Seq
CACTGTTGGCCTACTGGAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAA----------AGAGAATGAAGAAAGACCATTTTTCAAATAAAAATTTACAAC
AACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAA
ATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATC
AACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAA
AAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATG
AGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATA
TTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAAC
AATTATTAGAACAAGAACAAAATCAAAAANATTNATCATTCTTTCTTTTNAAAAAC