SHE557
Library SH
(Link to library)
Clone ID SHE557
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID SHE557P
(Link to Original site)
Representative DNA sequence
>SHE557 (SHE557Q) /CSM/SH/SHE5-C/SHE557Q.Seq.d/
ACTGTTGGCCTACTGGNAATAACAATAAAATAGNATTTTTACATTTATTTTTATTTATTT
CATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGNAAAAAAAGNAAAAAAAAAXXXXX
XXXXXGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCA
GTTTGCAAACCA
sequence update 2002.10.25
Translated Amino Acid sequence
CWPTGNNNKIXFLHLFLFISYLFLLEKKEKKXKKXKK---

---VLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCP
IGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKR
GMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFT
PVCKP


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxitik*xfyiyfylfhiyfcwkkkkkkxkkxkk---

---gfkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*lls
nwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*k
rngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ih
tslqt

Frame B:
llaywx*q*nxiftfifiyfififvgkkrkkxkkxkkk---

---VLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCP
IGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKR
GMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFT
PVCKP

Frame C:
CWPTGNNNKIXFLHLFLFISYLFLLEKKEKKXKKXKK---

---f*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvq
lvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivke
ewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnsh
qfan

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/ 1084 0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/ 1084 0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/ 1084 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1084 0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/ 1084 0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/ 1084 0.0
SHF835 (SHF835Q) /CSM/SH/SHF8-B/SHF835Q.Seq.d/ 1084 0.0
SHF473 (SHF473Q) /CSM/SH/SHF4-D/SHF473Q.Seq.d/ 1084 0.0
SHF242 (SHF242Q) /CSM/SH/SHF2-B/SHF242Q.Seq.d/ 1084 0.0
SHF183 (SHF183Q) /CSM/SH/SHF1-D/SHF183Q.Seq.d/ 1084 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CI031115|CI031115.1 Oryza sativa (japonica cultivar-group) cDNA, clone: 009-M083R-E03, 3'end of 001-121-H11. 42 0.40 2
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence. 46 0.98 1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 1.5 3
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces. 34 1.9 2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.9 1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.9 1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.9 1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.9 1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence. 44 3.9 1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 44 3.9 1
dna update 2006. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 317 3e-85
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 186 5e-46
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 52 2e-05
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 43 0.007
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 43 0.007
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 42 0.016
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 42 0.021
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 39 0.13
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 37 0.39
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ... 37 0.39
protein update 2009. 4.17
PSORT

psg: 0.96 gvh: 0.57 alm: 0.29 top: 0.77 tms: 0.07 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SHE557 is cyt

5' end seq. ID SHE557F
5' end seq.
>SHE557F.Seq
ACTGTTGGCCTACTGGNAATAACAATAAAATAGNATTTTTACATTTATTTTTATTTATTT
CATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGNAAAAAAAGNAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID SHE557Z
3' end seq.
>SHE557Z.Seq
NNNNNNNNNNGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAA
ATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAA
TTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTC
CAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCA
CTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAG
GTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAA
GAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAAT
GTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTA
AAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCA
CACCAGTTTGCAAACCA
Length of 3' end seq. 557
Connected seq. ID SHE557P
Connected seq.
>SHE557P.Seq
ACTGTTGGCCTACTGGNAATAACAATAAAATAGNATTTTTACATTTATTTTTATTTATTT
CATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGNAAAAAAAGNAAAAAAAAA-----
-----GGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCA
GTTTGCAAACCA
Length of connected seq. 662
Full length Seq ID -
Full length Seq. -
Length of full length seq. -