>SHE486 (SHE486Q) /CSM/SH/SHE4-D/SHE486Q.Seq.d/
ATCATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTC
CGCAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAA
AAAAAAAXXXXXXXXXXAGATATGTTGAAAGCTCATAAAAAAGGTATTCGTCGTGCCGCT
GTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCNTCAAGAGGTATTGGCAACCCTA
TTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGCC
ATTGTTGCGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATCGT
ATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATAT
ATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCACTC
ATGGATAGAGATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCATTG
GGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCA
AATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTNA

slhvrl*nisqiffilk*isaiptnkkkl*r*nli*YNIKKK---

---DMLKAHKKGIRRAAVNTFGYIAKAIGXQEVLATLLNNLKVQDRQNRVCTTVAIAIVA
ETCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMDR
DAVHRQTACSAIKHISLGVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAV

Frame A:
iitcsiveyftdffyfkinfrnsnk*keiieikfnii*ykkk---

---ryvess*krysscrckyiwlhcksywssrgignpikqfessrsskqslynrchchcc
gnlctlyrftrsnq*isysrvecskwcfeififpl*iywrng*rlylrrnyptrrcthg*
rcctssnrllcn*tyfigcngfrl*rfthsftqlrlakcfrnfstcyqrflrgrx

Frame B:
slhvrl*nisqiffilk*isaiptnkkkl*r*nli*YNIKKK---

---DMLKAHKKGIRRAAVNTFGYIAKAIGXQEVLATLLNNLKVQDRQNRVCTTVAIAIVA
ETCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMDR
DAVHRQTACSAIKHISLGVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAV

Frame C:
hymfdcrifhrfflf*nkfpqfqqikrnyrdki*ynii*kk---

---ic*klikkvfvvpl*ihlvtlqkllvxkrywqpy*ti*kfkivktefvqplplpllr
klvhlipfyqv*smnivfqs*mfkmvf*nlylsslnilakwvktiftp*lpyskmhswie
mlyivkplalqlnifhwv*wv*vvkihsliysitfgqmfskllhmlstls*rpx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA852 (VHA852Q) /CSM/VH/VHA8-C/VHA852Q.Seq.d/                       1013   0.0
SHE486 (SHE486Q) /CSM/SH/SHE4-D/SHE486Q.Seq.d/                       1013   0.0
SHA183 (SHA183Q) /CSM/SH/SHA1-D/SHA183Q.Seq.d/                       1013   0.0
AHM560 (AHM560Q) /CSM/AH/AHM5-C/AHM560Q.Seq.d/                       1013   0.0
AHD733 (AHD733Q) /CSM/AH/AHD7-B/AHD733Q.Seq.d/                       1013   0.0
AHD177 (AHD177Q) /CSM/AH/AHD1-D/AHD177Q.Seq.d/                       1013   0.0
AHA193 (AHA193Q) /CSM/AH/AHA1-D/AHA193Q.Seq.d/                       1013   0.0
CHM843 (CHM843Q) /CSM/CH/CHM8-B/CHM843Q.Seq.d/                       1011   0.0
VHB738 (VHB738Q) /CSM/VH/VHB7-B/VHB738Q.Seq.d/                       1005   0.0
CHM817 (CHM817Q) /CSM/CH/CHM8-A/CHM817Q.Seq.d/                       1005   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence.  1013   0.0    3
AU312337|AU312337.1 Elaphe quadrivirgata cDNA, clone:Eq_aB_021_F03.   109   7e-44  3
DV664609|DV664609.1 CGN-1811 Pericarp Coffea canephora cDNA clone cccp22c1 5', mRNA sequence.   100   6e-31  5
CX303109|CX303109.1 C08027F07SK PhyRootSw1 Citrus sinensis cDNA clone C08027F07, mRNA sequence.    68   2e-30  3
BJ615493|BJ615493.1 Xenopus laevis cDNA clone:XL172e10, 5' end.    68   3e-25  4
BJ617934|BJ617934.1 Xenopus laevis cDNA clone:XL182p08, 5' end.    68   5e-25  4
CK804232|CK804232.1 AGENCOURT_19145222 NICHD_XGC_Te2 Xenopus laevis cDNA clone IMAGE:7207503 5', mRNA sequence.    68   5e-23  4
CJ466124|CJ466124.1 Macaca fascicularis mRNA, clone: QnpA-15448, 5' end, expressed in brain parietal lobe.    68   6e-22  4
DV769286|DV769286.1 ILLUMIGEN_MCQ_68109 Katze_MMTE Macaca mulatta cDNA clone IBIUW:38456 5' similar to Bases 1 to 841 highly similar to human SF3B1 (Hs.471011), mRNA sequence.    68   7e-22  4
BI505248|BI505248.1 BB170019A10C07.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019A10C07 5', mRNA sequence.    82   2e-21  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008208_305(AP008208|pid:none) Oryza sativa (japonica cultivar-...   307   1e-82
AK221391_1(AK221391|pid:none) Arabidopsis thaliana mRNA for nucl...   305   5e-82
AE014134_132(AE014134|pid:none) Drosophila melanogaster chromoso...   300   3e-80
(O57683) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   293   4e-78
(O75533) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   293   4e-78
CP000583_21(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   287   2e-76
AM270010_46(AM270010|pid:none) Aspergillus niger contig An02c015...   283   2e-75
AP007159_186(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   283   2e-75
CU633899_368(CU633899|pid:none) Podospora anserina genomic DNA c...   279   4e-74
(Q10178) RecName: Full=U2 snRNP component prp10;  &CU329670_1789...   272   5e-72

 psg: 0.35  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHE486 is nuc

>SHE486F.Seq
ATCATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTC
CGCAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAA
AAAAAAANNNNNNNNNN

>SHE486Z.Seq
NNNNNNNNNNAGATATGTTGAAAGCTCATAAAAAAGGTATTCGTCGTGCCGCTGTAAATA
CATTTGGTTACATTGCAAAAGCTATTGGTCNTCAAGAGGTATTGGCAACCCTATTAAACA
ATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGCCATTGTTG
CGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATCGTATTCCAG
AGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATATATTGGCG
AAATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCACTCATGGATA
GAGATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCATTGGGTGTAA
TGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCAAATGTTT
TCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTNA

>SHE486P.Seq
ATCATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTC
CGCAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAA
AAAAAAA----------AGATATGTTGAAAGCTCATAAAAAAGGTATTCGTCGTGCCGCT
GTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCNTCAAGAGGTATTGGCAACCCTA
TTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGCC
ATTGTTGCGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAATATCGT
ATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATAT
ATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCCTACTCGAAGATGCACTC
ATGGATAGAGATGCTGTACATCGTCAAACCGCTTGCTCTGCAATTAAACATATTTCATTG
GGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCA
AATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTNA