SHE480
Library SH
(Link to library)
Clone ID SHE480
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHE480P
(Link to Original site)
Representative DNA sequence
>SHE480 (SHE480Q) /CSM/SH/SHE4-D/SHE480Q.Seq.d/
AATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATA
ATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXX
AATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTT
GAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGT
ATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTA
GATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACAGNAACAA
CAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAA
GAACAAAATCAAAAATATTNATCATTCTTTCTTTTTA
sequence update 2002.10.25
Translated Amino Acid sequence
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDEN
LVQEKQQSPDQIKNQLKNIQQXQQIQEQQDKLNQEKNQQLLEQEQNQKYXSFFLF


Translated Amino Acid sequence (All Frames)
Frame A:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDEN
LVQEKQQSPDQIKNQLKNIQQXQQIQEQQDKLNQEKNQQLLEQEQNQKYXSFFLF

Frame B:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---mvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmkl
pf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqml
nnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri
*fkrnnnlltklkin*kifnxnnksknnkin*ikkkinny*nknkiknixhsffl

Frame C:
**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---w*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sc
lfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*
ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*ef
ssrettis*pn*ksikkystxttnprttr*iksrkkstiirtrtkskixiilsf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/ 607 e-172
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/ 607 e-172
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/ 607 e-172
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 607 e-172
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 607 e-172
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/ 607 e-172
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 607 e-172
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 607 e-172
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/ 607 e-172
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 607 e-172

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 607 0.0 6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-25 1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 0.001 8
AX458543|AX458543.1 Sequence 89 from Patent WO0246454. 34 0.050 5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.13 12
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 0.30 10
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.30 1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence. 48 0.30 1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence. 48 0.30 1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence. 48 0.30 1
dna update 2006. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 226 5e-58
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom... 35 2.1
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 2.1
AL844508_312(AL844508|pid:none) Plasmodium falciparum strain 3D7... 34 6.2

protein update 2009. 4.17
PSORT

psg: 0.61 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SHE480 is nuc

5' end seq. ID SHE480F
5' end seq.
>SHE480F.Seq
AATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATA
ATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 120
3' end seq. ID SHE480Z
3' end seq.
>SHE480Z.Seq
NNNNNNNNNNAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAAT
GGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACA
TTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGT
TGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATT
AGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACT
TAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGT
TGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACA
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACAGNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATT
ATTAGAACAAGAACAAAATCAAAAATATTNATCATTCTTTCTTTTTA
Length of 3' end seq. 707
Connected seq. ID SHE480P
Connected seq.
>SHE480P.Seq
AATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATA
ATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------
AATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTT
GAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGT
ATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTA
GATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACAGNAACAA
CAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAA
GAACAAAATCAAAAATATTNATCATTCTTTCTTTTTA
Length of connected seq. 807
Full length Seq ID -
Full length Seq. -
Length of full length seq. -