AFJ275
Library AF
(Link to library)
Clone ID AFJ275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID AFJ275F
(Link to Original site)
Representative DNA sequence
>AFJ275 (AFJ275Q) /CSM/AF/AFJ2-D/AFJ275Q.Seq.d/
ATTCAAAAAAAAAAATATTAAATCNTTGTAGTATTTTGTTCNTATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
SKKKILNXCSILFXFKLNINXIKKX*n*ickinlxqxlvx*kkknqkk---


Translated Amino Acid sequence (All Frames)
Frame A:
iqkkky*ixvvfcsysn*isxqlkxvkikfvksicxkx*xfkkkktkkk---


Frame B:
fkkkniksl*yfvxiqikyqxn*kxlklnl*nqfvxkxsxlkkkkpkk---


Frame C:
SKKKILNXCSILFXFKLNINXIKKX*n*ickinlxqxlvx*kkknqkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/ 137 5e-32
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/ 137 5e-32
SFK755 (SFK755Q) /CSM/SF/SFK7-C/SFK755Q.Seq.d/ 137 5e-32
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/ 137 5e-32
SFJ774 (SFJ774Q) /CSM/SF/SFJ7-D/SFJ774Q.Seq.d/ 137 5e-32
SFJ616 (SFJ616Q) /CSM/SF/SFJ6-A/SFJ616Q.Seq.d/ 137 5e-32
SFJ560 (SFJ560Q) /CSM/SF/SFJ5-C/SFJ560Q.Seq.d/ 137 5e-32
SFJ516 (SFJ516Q) /CSM/SF/SFJ5-A/SFJ516Q.Seq.d/ 137 5e-32
SFJ435 (SFJ435Q) /CSM/SF/SFJ4-B/SFJ435Q.Seq.d/ 137 5e-32
SFJ232 (SFJ232Q) /CSM/SF/SFJ2-B/SFJ232Q.Seq.d/ 137 5e-32

own update 2002.10.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 88 3e-25 2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 5e-23 2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 88 4e-14 1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 62 3e-06 1
BX322622|BX322622.10 Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8. 36 0.16 4
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 28 0.38 3
AF031860|AF031860.1 Rhipicephalus compositus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence. 40 0.45 2
BX088532|BX088532.7 Zebrafish DNA sequence from clone CH211-127E17 in linkage group 8. 36 0.73 4
BM322107|BM322107.1 RN708T7 Sea urchin radial nerve Lambda Zap cDNA library Heliocidaris erythrogramma cDNA 3', mRNA sequence. 32 1.5 2
AE017339|AE017339.1 Mycoplasma mobile 163K section 3 of 3 of... 38 1.7 6
dna update 2004. 9.24
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 107,648,576
protein update 2009. 4.23
PSORT

psg: 0.92 gvh: 0.39 alm: 0.45 top: 0.47 tms: 0.00 mit: 0.43 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
28.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFJ275 is mit

5' end seq. ID AFJ275F
5' end seq.
>AFJ275F.Seq
ATTCAAAAAAAAAAATATTAAATCNTTGTAGTATTTTGTTCNTATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAA----------
Length of 5' end seq. 148
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -