AFJ272
Library AF
(Link to library)
Clone ID AFJ272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13958-1
Original site URL
Representative seq. ID AFJ272F
(Link to Original site)
Representative DNA sequence
>AFJ272 (AFJ272Q) /CSM/AF/AFJ2-C/AFJ272Q.Seq.d/
ATAATCTATTTAAATATTATACATATATATCTATAATTGTAATAATAAATAAATAATAAA
TAAATAAAATTTTTTTTTTTTTTTTAAAAGGNGTAANCAATTNGAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
NLFKYYTYISIIVIINK**inkifffflkgvxnx---


Translated Amino Acid sequence (All Frames)
Frame A:
iiylniihiyl*l***innk*ikfffff*kx*xi---


Frame B:
*si*ilyiyiyncnnk*iink*nfffffkrxxqx---


Frame C:
NLFKYYTYISIIVIINK**inkifffflkgvxnx---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 115
length of database: 80,480,566
effective HSP length: 17
effective length of query: 98
effective length of database: 78,821,179
effective search space: 7724475542
effective search space used: 7724475542
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 3
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 38713788
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 115
length of database: Z,831,660,665
effective HSP length: 21
effective length of query: 94
effective length of database: Z,018,671,117
effective search space: 3949755084998
effective search space used: 3949755084998
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] 1095961833.dbm.dna: Blast: No valid letters to be indexed on context 0

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 9.24
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 19,279,148
protein update 2009. 4.23
PSORT -
5' end seq. ID AFJ272F
5' end seq.
>AFJ272F.Seq
ATAATCTATTTAAATATTATACATATATATCTATAATTGTAATAATAAATAAATAATAAA
TAAATAAAATTTTTTTTTTTTTTTTAAAAGGNGTAANCAATTNGA----------
Length of 5' end seq. 105
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -