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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE407
Library SH
(Link to library)
Clone ID SHE407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHE407P
(Link to Original site)
Representative DNA sequence 
>SHE407 (SHE407Q) /CSM/SH/SHE4-A/SHE407Q.Seq.d/
AATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTA
TTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAA
AGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTA
AATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTT
GATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTT
TTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACA
TATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAA
ATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGT
GGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGA
GATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAAC
CTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACXXXXXXXXXXCG
ATGGTAAACCATGTACACAACCNTGAAATCAACATTCCCCACTTATTCTAGTTTAACCTG
TAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATAT
CAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAATC
AACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTAT
TGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGGTTGAAA
AACATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTA
AACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCG
CTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCAC
TCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAA
TAATATCCAATTNTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
n*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILL
NPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFT
YNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTG
DIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVEN---

---MVNHVHNXEINIPHLF*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi*
i*inn*l**k*virisk*nvyryccnynifsinflcy*ntglknilkreepekhldqlii
yvlnfvrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqi
qiq*ypixn*t*tkftnl*sn
Translated Amino Acid sequence (All Frames) 
Frame A:
n*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILL
NPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFT
YNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTG
DIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVEN---

---rw*tmyttxkstfptyssltcnvtnydemlkynysntkfnisisvdgqyfiaqifqf
kyestisysenkssgfpnemyigivaiiiflaliffaiktqg*kty*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqx*ikpkpnspiynqi

Frame B:
idpqlviske*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmiklfpff*
iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*edplish
itilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fimlhikle
iyqinqqsmtkeilpfkevtfttpklkliqmiplk---

---dgkpctqp*nqhsplilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsnl
nmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrvekhieerrarkafrsvdn
lrlklrekhaaeiakhysfgyesapkpnksyfydlgkklsrlplirccfkehtd*ilfpn
snpiisnxklnlnqihqsiik*

Frame C:
ltrn**lvkneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssyfhsfk
sk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fhi
*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*cfisnwr
ytk*tnnr*prkyyhsrk*plqhpn*n*fk*sr*k---

---MVNHVHNXEINIPHLF*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi*
i*inn*l**k*virisk*nvyryccnynifsinflcy*ntglknilkreepekhldqlii
yvlnfvrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqi
qiq*ypixn*t*tkftnl*sn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE407 (SHE407Q) /CSM/SH/SHE4-A/SHE407Q.Seq.d/                       2246   0.0
SHJ822 (SHJ822Q) /CSM/SH/SHJ8-A/SHJ822Q.Seq.d/                       1142   0.0
AHA485 (AHA485Q) /CSM/AH/AHA4-D/AHA485Q.Seq.d/                       1134   0.0
AHK223 (AHK223Q) /CSM/AH/AHK2-A/AHK223Q.Seq.d/                       1128   0.0
SHL412 (SHL412Q) /CSM/SH/SHL4-A/SHL412Q.Seq.d/                       1126   0.0
SHG285 (SHG285Q) /CSM/SH/SHG2-D/SHG285Q.Seq.d/                       1126   0.0
SHD222 (SHD222Q) /CSM/SH/SHD2-A/SHD222Q.Seq.d/                       1126   0.0
SHB484 (SHB484Q) /CSM/SH/SHB4-D/SHB484Q.Seq.d/                       1126   0.0
SHA686 (SHA686Q) /CSM/SH/SHA6-D/SHA686Q.Seq.d/                       1126   0.0
SHA327 (SHA327Q) /CSM/SH/SHA3-B/SHA327Q.Seq.d/                       1126   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   204   1e-84  11
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.090  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.091  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.091  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.091  2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.091  2
AC122168|AC122168.14 Medicago truncatula clone mth2-4o4, complete sequence.    42   0.13   6
AC093411|AC093411.2 Homo sapiens chromosome 3 clone RP11-1C5, complete sequence.    38   0.19   8
AY689436|AY689436.1 Deerpox virus W-848-83, complete genome.       32   0.45   11
AX345887|AX345887.1 Sequence 958 from Patent WO0200928.            34   0.47   5
dna update 2006. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   396   e-109
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   396   e-109
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   396   e-109
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   396   e-109
FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   147   7e-34
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   144   8e-33
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   139   9e-32
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   132   9e-32
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   139   9e-32
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   137   1e-31
protein update 2009. 4.17
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.31  top: 0.23  tms: 0.07  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHE407 is end
5' end seq. ID SHE407F
5' end seq. 
>SHE407F.Seq
AATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTA
TTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAA
AGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTA
AATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTT
GATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTT
TTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACA
TATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAA
ATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGT
GGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGA
GATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAAC
CTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACNNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID SHE407Z
3' end seq. 
>SHE407Z.Seq
NNNNNNNNNNCGATGGTAAACCATGTACACAACCNTGAAATCAACATTCCCCACTTATTC
TAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATAC
TAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATT
TAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAAT
GTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAAC
ACAGGGTTGAAAAACATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATA
ATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTG
GTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTAT
CTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAA
ATTCAAATCCAATAATATCCAATTNTAAATTAAACCTAAACCAAATTCACCAATCTATAA
TCAAATAA
Length of 3' end seq. 608
Connected seq. ID SHE407P
Connected seq. 
>SHE407P.Seq
AATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTA
TTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAA
AGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTA
AATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTT
GATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTT
TTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACA
TATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAA
ATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGT
GGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGA
GATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAAC
CTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAAC----------CG
ATGGTAAACCATGTACACAACCNTGAAATCAACATTCCCCACTTATTCTAGTTTAACCTG
TAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATAT
CAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAATC
AACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTAT
TGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGGTTGAAA
AACATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTA
AACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCG
CTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCAC
TCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAA
TAATATCCAATTNTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAA
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -