SHE326
Library SH
(Link to library)
Clone ID SHE326
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHE326 (SHE326Q) /CSM/SH/SHE3-B/SHE326Q.Seq.d/
XXXXXXXXXXTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT
TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCC
AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC
TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG
TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG
AGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATG
TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA
AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCNC
ACCAGNTTGCAAACC
sequence update 2002. 9.10
Translated Amino Acid sequence
---QNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTG
GIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCL
DCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFXPXCK


Translated Amino Acid sequence (All Frames)
Frame A:
---vkiiqltvvlhhhqfqlvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqpl
vvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv
*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnshqxan


Frame B:
---sk*sn*rlcytitsfnwwnypsnhywcits*v*llsnwskmfisqws*nly*tsnhw
wysrinywlcwynnwqgyrslhriryr*stfm**isl*krngmscc*wcsrmftiklqmf
rlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ixtxlqt


Frame C:
---QNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTG
GIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCL
DCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFXPXCK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/ 950 0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/ 950 0.0
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/ 950 0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/ 950 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 950 0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/ 950 0.0
SHG839 (SHG839Q) /CSM/SH/SHG8-B/SHG839Q.Seq.d/ 950 0.0
SHG789 (SHG789Q) /CSM/SH/SHG7-D/SHG789Q.Seq.d/ 950 0.0
SHG748 (SHG748Q) /CSM/SH/SHG7-B/SHG748Q.Seq.d/ 950 0.0
SHG737 (SHG737Q) /CSM/SH/SHG7-B/SHG737Q.Seq.d/ 950 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 0.64 3
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence. 46 0.72 1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 44 1.2 2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence. 44 2.8 1
dna update 2006. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 288 4e-77
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 173 2e-42
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 52 7e-06
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 43 0.004
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 43 0.004
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 42 0.006
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 40 0.029
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ... 37 0.19
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 37 0.32
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 36 0.42
protein update 2009. 5.29
PSORT

psg: 0.75 gvh: 0.42 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SHE326 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHE326Z
3' end seq.
>SHE326Z.Seq
NNNNNNNNNNTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT
TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCC
AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC
TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG
TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG
AGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATG
TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA
AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCNC
ACCAGNTTGCAAACC
Length of 3' end seq. 495
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -