AFJ255
Library AF
(Link to library)
Clone ID AFJ255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFJ255Z
(Link to Original site)
Representative DNA sequence
>AFJ255 (AFJ255Q) /CSM/AF/AFJ2-C/AFJ255Q.Seq.d/
XXXXXXXXXXGCTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTTGATTC
AGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTCGATACCGT
CTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCAACC
AGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAAAAGTT
GGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGTCATTG
CAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTTGAATCTGT
CTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAAATTAGAGG
TTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCTTATGAAGG
TCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---HMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPE
PESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVS
IVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDN


Translated Amino Acid sequence (All Frames)
Frame A:
---liwvslvklfqpslliqlpiklvtismkkkpshsipspngskmslvvkflhllnlnq
nqnqmmlqlrlplvplskswf*thqrmfwlnstlhgaviarillqstin*vnt*ktlnls
qs*rlmptqmmyqvisklevtqpscssklmtkkiqslmkvkemii*tllnsfkit


Frame B:
---sygslw*scsshlc*fscq*sslqfr*krnlliryrlqmdprchww*sfsic*istr
trik*css*gcrwyhfqkvgfrltkgcfg*ilrsmvrslqescsnlr*ir*ilkrr*icl
nrkd*crlk*ctk*yrn*rlpnhhalqs**qrksnll*rskk*syelc*ihsr*r


Frame C:
---HMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPE
PESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVS
IVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ255 (AFJ255Q) /CSM/AF/AFJ2-C/AFJ255Q.Seq.d/ 1027 0.0
VFN727 (VFN727Q) /CSM/VF/VFN7-B/VFN727Q.Seq.d/ 1025 0.0
VFM432 (VFM432Q) /CSM/VF/VFM4-B/VFM432Q.Seq.d/ 1025 0.0
VFL328 (VFL328Q) /CSM/VF/VFL3-B/VFL328Q.Seq.d/ 1025 0.0
VFK816 (VFK816Q) /CSM/VF/VFK8-A/VFK816Q.Seq.d/ 1025 0.0
VFK745 (VFK745Q) /CSM/VF/VFK7-B/VFK745Q.Seq.d/ 1025 0.0
SFL445 (SFL445Q) /CSM/SF/SFL4-B/SFL445Q.Seq.d/ 1025 0.0
SFL246 (SFL246Q) /CSM/SF/SFL2-B/SFL246Q.Seq.d/ 1025 0.0
SFK855 (SFK855Q) /CSM/SF/SFK8-C/SFK855Q.Seq.d/ 1025 0.0
SFI119 (SFI119Q) /CSM/SF/SFI1-A/SFI119Q.Seq.d/ 1025 0.0

own update 2004. 8.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 4e-08 1
BC067155|BC067155.1 Danio rerio zgc:77086, mRNA (cDNA clone MGC:77086 IMAGE:6960343), complete cds. 70 4e-08 1
CK029548|CK029548.1 AGENCOURT_16620510 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7051751 5', mRNA sequence. 70 4e-08 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 4e-08 1
dna update 2004. 9.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 164 1e-39
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 158 9e-38
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 157 1e-37
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 156 3e-37
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 153 3e-36
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 150 1e-35
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 147 2e-34
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 147 2e-34
(P13667) RecName: Full=Protein disulfide-isomerase A4; ... 147 2e-34
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 146 3e-34
protein update 2009. 4.23
PSORT

psg: 0.79 gvh: 0.38 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for AFJ255 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFJ255Z
3' end seq.
>AFJ255Z.Seq
----------GCTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTTGATTC
AGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTCGATACCGT
CTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCAACC
AGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAAAAGTT
GGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGTCATTG
CAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTTGAATCTGT
CTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAAATTAGAGG
TTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCTTATGAAGG
TCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGC
Length of 3' end seq. 518
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -