>SHE239 (SHE239Q) /CSM/SH/SHE2-B/SHE239Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGAT
TGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAANT
AAAAAATA

iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---EEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY
EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQ
QVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNK
QENQDENLVQEKQQSPDQIKNQXKN

Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---EEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY
EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQ
QVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNK
QENQDENLVQEKQQSPDQIKNQXKN

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---kklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsm
klpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnn
kfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiin
krikmri*fkrnnnlltklkix*ki

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*
scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrttt
sssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**t
resr*efssrettis*pn*ksxkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        646   0.0
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        646   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        646   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        646   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        646   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        646   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        646   0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        646   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        646   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        646   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   646   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.071  7
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.27   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.27   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.27   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.27   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.27   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.27   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.27   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   255   8e-67
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           36   1.3
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.7
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.7
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    35   1.7
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   6.5
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   8.5
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   8.5
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   8.5
CP000487_662(CP000487|pid:none) Campylobacter fetus subsp. fetus...    33   8.5

 psg: 0.23  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHE239 is cyt

>SHE239F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N

>SHE239Z.Seq
NNNNNNNNNNGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAANTAAAAAATA

>SHE239P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-GAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGAT
TGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAANT
AAAAAATA