>SHE236 (SHE236Q) /CSM/SH/SHE2-B/SHE236Q.Seq.d/
XXXXXXXXXXTCCAATCAATGATCATGGTCCAAGTATTATCGCTCATCATTCAACCGTTG
AAATTAGAAAAACTAAATTGATTAGTACAAATCCATCAATAACAAGTGAATTCCCATACA
TTGTTTCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCACCAACTACTCAAT
TACCATTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCAAGTATAAATGCAT
CTTTGTTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACCTATGCAAATATTG
TCTCTGGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTCGATCCAAATATTC
AACCACCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCTCATCATACCTATA
AATATGATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATTGCTTGTACTTTCC
TCACTTTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAATCTTTATAGAGGTT
ATGCTCCACATGAAAGTGAAGAACCTGATCTTGAAGAA

---PINDHGPSIIAHHSTVEIRKTKLISTNPSITSEFPYIVSNYASVRVQEITLSPTTQL
PFKCDSSLILFDYASSINASLFVCNNIHGDAYNSTYANIVSGNDINSFSCEIIQFDPNIQ
PPSRSTPNIVCSNESHHTYKYDFRLTKAIIAVIVIACTFLTLIPVVLLANKIYKNLYRGY
APHESEEPDLEE

Frame A:
---PINDHGPSIIAHHSTVEIRKTKLISTNPSITSEFPYIVSNYASVRVQEITLSPTTQL
PFKCDSSLILFDYASSINASLFVCNNIHGDAYNSTYANIVSGNDINSFSCEIIQFDPNIQ
PPSRSTPNIVCSNESHHTYKYDFRLTKAIIAVIVIACTFLTLIPVVLLANKIYKNLYRGY
APHESEEPDLEE


Frame B:
---qsmimvqvlsliiqplklekln*lvqihq*qvnshtlfqimlvfeskr*hyhqllny
hsnvivp*fylimpqv*mhlclfviifmemliivpmqilslvmisihslvksfnsiqifn
hhldqlqi*svqmnliipinmild*qkpsllslsllvlssl*flwfy*qikfikifievm
lhmkvknlilk


Frame C:
---nq*swskyyrssfnr*n*kn*id*yksinnk*ipihcfklc*cssprdniitnysit
iqm**flnfi*lclkykcifvcl**yswrcl**ylckyclw**yqfill*nhsirskyst
ti*inskyslfk*issyl*i*f*inkshhcchchclyfphfnscgfisk*nl*ksl*rlc
st*k*rt*s*r

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE236 (SHE236Q) /CSM/SH/SHE2-B/SHE236Q.Seq.d/                       1126   0.0
AHL405 (AHL405Q) /CSM/AH/AHL4-A/AHL405Q.Seq.d/                       1126   0.0
AHK121 (AHK121Q) /CSM/AH/AHK1-A/AHK121Q.Seq.d/                       1126   0.0
AHI645 (AHI645Q) /CSM/AH/AHI6-B/AHI645Q.Seq.d/                       1126   0.0
AHI477 (AHI477Q) /CSM/AH/AHI4-D/AHI477Q.Seq.d/                       1126   0.0
AHH436 (AHH436Q) /CSM/AH/AHH4-B/AHH436Q.Seq.d/                       1126   0.0
AHB517 (AHB517Q) /CSM/AH/AHB5-A/AHB517Q.Seq.d/                       1126   0.0
AFI731 (AFI731Q) /CSM/AF/AFI7-B/AFI731Q.Seq.d/                       1126   0.0
AHQ285 (AHQ285Q) /CSM/AH/AHQ2-D/AHQ285Q.Seq.d/                       1124   0.0
AHC231 (AHC231Q) /CSM/AH/AHC2-B/AHC231Q.Seq.d/                       1124   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC005323|AC005323.1 Homo sapiens chromosome 17, clone hRPK.799_N_11, complete sequence.    50   0.054  1
AC073888|AC073888.2 Homo sapiens chromosome 6 clone RP11-124N8, WORKING DRAFT SEQUENCE, 16 unordered pieces.    48   0.21   1
B31392|B31392.1 HS-1008-B2-B01-MF.abi CIT Human Genomic Sperm Library C Homo sapiens genomic clone Plate=CT 330 Col=2 Row=D, genomic survey sequence.    48   0.21   1
AQ429355|AQ429355.1 CITBI-E1-2560K19.TF CITBI-E1 Homo sapiens genomic clone 2560K19, genomic survey sequence.    48   0.21   1
AL359633|AL359633.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-795J1.    48   0.21   1
BX530027|BX530027.11 Zebrafish DNA sequence from clone DKEYP-81G7 in linkage group 2.    40   0.35   6
AC170686|AC170686.2 Bos taurus clone CH240-218K8, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    46   0.84   1
BZ497583|BZ497583.1 BONEZ21TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONEZ21, DNA sequence.    46   0.84   1
CP000053|CP000053.1 Rickettsia felis URRWXCal2, complete genome.    46   0.84   1
AC103672|AC103672.7 Mus musculus chromosome 15, clone RP24-351G3, complete sequence.    46   0.84   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48717_1(U48717|pid:none) Cryptosporidium parvum zinc finger pro...    35   1.4
AJ720220_1(AJ720220|pid:none) Gallus gallus mRNA for hypothetica...    33   4.1
EF502054_1(EF502054|pid:none) Anas platyrhynchos prolactin recep...    33   5.4
EF502053_1(EF502053|pid:none) Anas platyrhynchos prolactin recep...    33   5.4
BC103492_1(BC103492|pid:none) Homo sapiens SATB homeobox 2, mRNA...    32   9.1
AK056638_1(AK056638|pid:none) Homo sapiens cDNA FLJ32076 fis, cl...    32   9.1
(Q9UPW6) RecName: Full=DNA-binding protein SATB2; AltName: Full=...    32   9.1
AB028957_1(AB028957|pid:none) Homo sapiens mRNA for KIAA1034 pro...    32   9.1

 psg: 0.75  gvh: 0.34  alm: 0.15  top: 0.57  tms: 0.07  mit: 0.22  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.37  leu: 0.12  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHE236 is nuc

>SHE236Z.Seq
NNNNNNNNNNTCCAATCAATGATCATGGTCCAAGTATTATCGCTCATCATTCAACCGTTG
AAATTAGAAAAACTAAATTGATTAGTACAAATCCATCAATAACAAGTGAATTCCCATACA
TTGTTTCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCACCAACTACTCAAT
TACCATTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCAAGTATAAATGCAT
CTTTGTTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACCTATGCAAATATTG
TCTCTGGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTCGATCCAAATATTC
AACCACCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCTCATCATACCTATA
AATATGATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATTGCTTGTACTTTCC
TCACTTTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAATCTTTATAGAGGTT
ATGCTCCACATGAAAGTGAAGAACCTGATCTTGAAGAA