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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE235
Library SH
(Link to library)
Clone ID SHE235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15792-1
Original site URL
Representative seq. ID SHE235P
(Link to Original site)
Representative DNA sequence 
>SHE235 (SHE235Q) /CSM/SH/SHE2-B/SHE235Q.Seq.d/
AATTTTCCTCAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAAAAA
ACAACAATCACTTTTTTTTTTTGGNTTTTTTNATAAAAAATXXXXXXXXXXTTCCAACAT
TTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAACAATAACTCGAAGA
TCTCATGGAATTGGGCATNAGGTCACCAGAGATGAAGAATCAAATNGTTGNTGCACGTGG
TTCCATTCAATCCATCGGTGGCATCCNATGATGATTTGAAAGAACTCTATAAAACAGTTT
GGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGTTTGATCGTGGTGCTTTCATCGAT
CAAAGTCAAAGTTTCAATGTTTTCATNGCTGAACCAACCTTTGCTAAACTCACCTCAATG
CATT
sequence update 2002.10.25
Translated Amino Acid sequence 
fssninni*q*tk*INKKKNNNHFFFLXFXIKN---

---SNIYSRRVLAGEFTIVNKQ*ledlmelgxrspemknqxvxargsiqsiggix**fer
tl*nslgnpsknshrygclivvlssikvkvsmfsxlnqpllnspqci
Translated Amino Acid sequence (All Frames) 
Frame A:
nfpqtsiiysnklnk*ikkkttitfffwxfx*k---

---fqhlqsscfsr*ihncqqtitrrshgighxvtrdeesnxxctwfhsihrwhpmmi*k
nsikqfgksvkelssiwlfdrgafidqsqsfnvfxaeptfakltsmh

Frame B:
iflkhq*yiain*ink*kkkqqslfffgffxkk---

---SNIYSRRVLAGEFTIVNKQ*ledlmelgxrspemknqxvxargsiqsiggix**fer
tl*nslgnpsknshrygclivvlssikvkvsmfsxlnqpllnspqci

Frame C:
fssninni*q*tk*INKKKNNNHFFFLXFXIKN---

---ptftvvvf*qvnsqlstnnnskiswnwaxghqr*rikxlxhvvpfnpsvasxddlke
lyktvweirqrtlidmav*swcfhrskskfqcfhx*tnlc*thlna
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE235 (SHE235Q) /CSM/SH/SHE2-B/SHE235Q.Seq.d/                        591   e-168
VHJ574 (VHJ574Q) /CSM/VH/VHJ5-D/VHJ574Q.Seq.d/                        535   e-151
VHJ361 (VHJ361Q) /CSM/VH/VHJ3-C/VHJ361Q.Seq.d/                        535   e-151
VHI178 (VHI178Q) /CSM/VH/VHI1-D/VHI178Q.Seq.d/                        535   e-151
VHE423 (VHE423Q) /CSM/VH/VHE4-A/VHE423Q.Seq.d/                        535   e-151
VHD391 (VHD391Q) /CSM/VH/VHD3-D/VHD391Q.Seq.d/                        535   e-151
SHL237 (SHL237Q) /CSM/SH/SHL2-B/SHL237Q.Seq.d/                        535   e-151
SHL165 (SHL165Q) /CSM/SH/SHL1-C/SHL165Q.Seq.d/                        535   e-151
SHL127 (SHL127Q) /CSM/SH/SHL1-B/SHL127Q.Seq.d/                        535   e-151
SHK789 (SHK789Q) /CSM/SH/SHK7-D/SHK789Q.Seq.d/                        535   e-151
own update 2002.10.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ927126|BJ927126.1 Daphnia magna cDNA, clone:IGU001_0018_F01.r, 3' end, expressed inwhole body.    60   4e-06  2
AW332783|AW332783.1 S13A1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48   0.010  2
AW332364|AW332364.1 S7E4 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48   0.010  2
AW335099|AW335099.1 S43B7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48   0.011  2
AW334328|AW334328.1 S33D5 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48   0.012  2
BE716067|BE716067.1 MR2-HT0758-030700-005-b01 HT0758 Homo sapiens cDNA, mRNA sequence.    36   0.032  2
BE716049|BE716049.1 MR2-HT0758-030700-003-a04 HT0758 Homo sapiens cDNA, mRNA sequence.    36   0.12   2
DW097520|DW097520.1 CLPY8547.b1_F01.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY8547, mRNA sequence.    48   0.15   1
CB374760|CB374760.1 ru64c04.y1 Heterodera glycines J4 Heterodera glycines cDNA 5', mRNA sequence.    48   0.15   1
DV426996|DV426996.1 NADY185TR Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADY185, mRNA sequence.    46   0.61   1
dna update 2006. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...    71   3e-23
AM437010_1(AM437010|pid:none) Vitis vinifera contig VV78X108426....    54   1e-19
AP004240_6(AP004240|pid:none) Oryza sativa Japonica Group genomi...    52   2e-19
CP000581_13(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ...    52   5e-19
AF092841_1(AF092841|pid:none) Arabidopsis thaliana ribonucleosid...    50   5e-19
AC137522_12(AC137522|pid:none) Medicago truncatula clone mth2-9h...    50   2e-17
AC174293_1(AC174293|pid:none) Medicago truncatula clone mth2-70h...    50   2e-17
EU304328_151(EU304328|pid:none) Ostreococcus virus OsV5, complet...    45   5e-16
CP001102_479(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    48   4e-15
AM494965_96(AM494965|pid:none) Leishmania braziliensis chromosom...    44   5e-15
protein update 2009. 4.17
PSORT 

 psg: 0.97  gvh: 0.44  alm: 0.58  top: 0.37  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	 12.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SHE235 is nuc
5' end seq. ID SHE235F
5' end seq. 
>SHE235F.Seq
AATTTTCCTCAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAAAAA
ACAACAATCACTTTTTTTTTTTGGNTTTTTTNATAAAAAATNNNNNNNNNN
Length of 5' end seq. 111
3' end seq. ID SHE235Z
3' end seq. 
>SHE235Z.Seq
NNNNNNNNNNTTCCAACATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCA
ACAAACAATAACTCGAAGATCTCATGGAATTGGGCATNAGGTCACCAGAGATGAAGAATC
AAATNGTTGNTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCNATGATGATTTGAAA
GAACTCTATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGTTTGA
TCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATNGCTGAACCAACCTT
TGCTAAACTCACCTCAATGCATT
Length of 3' end seq. 323
Connected seq. ID SHE235P
Connected seq. 
>SHE235P.Seq
AATTTTCCTCAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAAAAA
ACAACAATCACTTTTTTTTTTTGGNTTTTTTNATAAAAAAT----------TTCCAACAT
TTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAACAATAACTCGAAGA
TCTCATGGAATTGGGCATNAGGTCACCAGAGATGAAGAATCAAATNGTTGNTGCACGTGG
TTCCATTCAATCCATCGGTGGCATCCNATGATGATTTGAAAGAACTCTATAAAACAGTTT
GGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGTTTGATCGTGGTGCTTTCATCGAT
CAAAGTCAAAGTTTCAATGTTTTCATNGCTGAACCAACCTTTGCTAAACTCACCTCAATG
CATT
Length of connected seq. 414
Full length Seq ID -
Full length Seq. -
Length of full length seq. -