>SHE226 (SHE226Q) /CSM/SH/SHE2-B/SHE226Q.Seq.d/
CAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTT
CATTTACAAGCTGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGAT
AGTATAATTACACAAAATACTGCTTTAGATTCATCTTGGGGTAGATATTTAAGAATGGTA
AAATCAGTTAAACAAGAACCAAATAAATATTCAGTTAGTGGTGAAGAAGATAAATTATGG
CAATTAGAGAAATTATTATTATCATTAAAAGGACAATTATTGGAGGGATTTATATTTCAA
TCATGTATTCAACAAGAGTTTGATTTTCCAGGTGTTATAGATGTTAAAGGTAATAAAGTT
TTGAAAGCAGAGTTTCAATATAATGTAAAGGTTTTATGGAGTATGTTTGGTACAAAGATA
ATGGATTCATCTGAATTGAATTTACGTGAGAGATTCCCAGGTTTCATGGGTTTATATGCA
TTTTACATAGCATTATTCAAGGATATCACCGATAAATCATTCTTTAAACAGGTTTGGGAA
GTTACAAAACGTGTACCAATGGTATCGATTAATGTTXXXXXXXXXX

QFASIYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTALDSSWGRYLRMV
KSVKQEPNKYSVSGEEDKLWQLEKLLLSLKGQLLEGFIFQSCIQQEFDFPGVIDVKGNKV
LKAEFQYNVKVLWSMFGTKIMDSSELNLRERFPGFMGLYAFYIALFKDITDKSFFKQVWE
VTKRVPMVSIN---

Frame A:
QFASIYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTALDSSWGRYLRMV
KSVKQEPNKYSVSGEEDKLWQLEKLLLSLKGQLLEGFIFQSCIQQEFDFPGVIDVKGNKV
LKAEFQYNVKVLWSMFGTKIMDSSELNLRERFPGFMGLYAFYIALFKDITDKSFFKQVWE
VTKRVPMVSIN---


Frame B:
nlhrsinhkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhkill*ihlgvdi*ew*
nqlnknqiniqlvvkkinygn*rnyyyh*kdnywrdlyfnhvfnkslifqvl*mlkvikf
*kqsfnim*rfygvclvqr*wihln*iyvrdsqvswvymhft*hysrispinhslnrfgk
lqnvyqwyrlm---


Frame C:
icidlsitkeytytil*ecsftscllfnd*yifsinkfr*ynytkycfrfilg*ifkngk
is*trtk*ifs*w*rr*imaireiiiiikrtiiggiyisimystrv*fsrcyrc*r**sf
esrvsi*ckgfmeyvwykdngfi*ieft*eiprfhgficilhsiiqgyhr*iil*tglgs
yktctngid*c---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE226 (SHE226Q) /CSM/SH/SHE2-B/SHE226Q.Seq.d/                       1142   0.0
VHF495 (VHF495Q) /CSM/VH/VHF4-D/VHF495Q.Seq.d/                       1072   0.0
VHD779 (VHD779Q) /CSM/VH/VHD7-D/VHD779Q.Seq.d/                        997   0.0
VHF890 (VHF890Q) /CSM/VH/VHF8-D/VHF890Q.Seq.d/                        359   3e-98
VHP184 (VHP184Q) /CSM/VH/VHP1-D/VHP184Q.Seq.d/                        329   3e-89
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/                        327   1e-88
VHI654 (VHI654Q) /CSM/VH/VHI6-C/VHI654Q.Seq.d/                        325   4e-88
CHE530 (CHE530Q) /CSM/CH/CHE5-B/CHE530Q.Seq.d/                        323   2e-87
VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/                        319   3e-86
VHH832 (VHH832Q) /CSM/VH/VHH8-B/VHH832Q.Seq.d/                        319   3e-86

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC133939|AC133939.4 Mus musculus BAC clone RP23-402F1 from chromosome 5, complete sequence.    42   0.025  2
AC112944|AC112944.7 Mus musculus chromosome 5, clone RP23-411F8, complete sequence.    42   0.027  2
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09.    50   0.055  1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10.    50   0.055  1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.055  1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.055  1
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16.    50   0.055  1
BX990136|BX990136.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP414o21.    50   0.055  1
BX984587|BX984587.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP250l19.    50   0.055  1
BX983296|BX983296.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP364i05.    50   0.055  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               344   1e-93
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   101   2e-20
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   101   2e-20
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   101   2e-20
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      101   2e-20
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   101   2e-20
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   101   2e-20
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...    99   1e-19
AY371725_1(AY371725|pid:none) Tetrahymena thermophila macronucle...    65   1e-09
AK065081_1(AK065081|pid:none) Oryza sativa Japonica Group cDNA c...    36   0.84

 psg: 0.66  gvh: 0.53  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHE226 is cyt

>SHE226F.Seq
CAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTT
CATTTACAAGCTGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGAT
AGTATAATTACACAAAATACTGCTTTAGATTCATCTTGGGGTAGATATTTAAGAATGGTA
AAATCAGTTAAACAAGAACCAAATAAATATTCAGTTAGTGGTGAAGAAGATAAATTATGG
CAATTAGAGAAATTATTATTATCATTAAAAGGACAATTATTGGAGGGATTTATATTTCAA
TCATGTATTCAACAAGAGTTTGATTTTCCAGGTGTTATAGATGTTAAAGGTAATAAAGTT
TTGAAAGCAGAGTTTCAATATAATGTAAAGGTTTTATGGAGTATGTTTGGTACAAAGATA
ATGGATTCATCTGAATTGAATTTACGTGAGAGATTCCCAGGTTTCATGGGTTTATATGCA
TTTTACATAGCATTATTCAAGGATATCACCGATAAATCATTCTTTAAACAGGTTTGGGAA
GTTACAAAACGTGTACCAATGGTATCGATTAATGTTNNNNNNNNNN