SHE219
Library SH
(Link to library)
Clone ID SHE219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10823-1
Original site URL
Representative seq. ID SHE219P
(Link to Original site)
Representative DNA sequence
>SHE219 (SHE219Q) /CSM/SH/SHE2-A/SHE219Q.Seq.d/
AAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATTTTTT
TTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATATCCAG
GTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAACCTTA
TTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACTTTTGAAA
CTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAAGTCCCAC
CAACTGTTAATCAATTAGTTGGAGAAAATCCANATTCAACTGATTATATAATTGAATTTA
CAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTTAATA
CAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTAXXXX
XXXXXXTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTT
TTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATAT
GGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGAT
GTAATCAACGTTCATATGNGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATAT
GTTACACCAGTTGATGGTATTCCAATTACCACTAAAATNTCTAGAACTTTACCATTTGAA
TTGATTATTGCCTTGGATTNTTCATTACAAGCAANTGGTCAATTATTNTTGGATGATGGT
GAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTNTCC
TCACCATCTTCATCTGCCTACAAATTACAATCAACCATTNTCAATAACAATTATAATGGT
ACCGCTTCTTTAATCATTAATTCTATCCAAATTTACGGTTCGCCATCAGTTCAACAAGTC
ATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCNGATTCAACTCTCTCTGTT
TCAAATTTACAACTTGCTTTAGATGAATCCTTGAAGTNATTTTGGATTANATTAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
ki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLI
SAGPYGNDIEQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGENPXSTDYIIEFT
NNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYL---

---FAIDQQFLVGTGLMVSPVFTQGATTVNAYFPNDIWYEYGNGSLVQSVGTHQTLNAPF
DVINVHMXGGNIIPTQPTSSYVTPVDGIPITTKXSRTLPFELIIALDXSLQAXGQLXLDD
GESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTIXNNNYNGTASLIINSIQIYGSPSVQQ
VIVNGSPINSFNAVSDSTLSVSNLQLALDESLKXFWIXLK


Translated Amino Acid sequence (All Frames)
Frame A:
kkyklklkkk*nfclh*lfflllyyfxlldhyqhhyvniqviqlkxlqkqimvmrqhltl
fqqvhmvti*nn*ifn*llklvkflxlxlltqiikdgkshqllin*lekixiqlii*lnl
qiihlvlqqlvfqlvkfyliqlnqvivhlmv*fiqiii---

---FAIDQQFLVGTGLMVSPVFTQGATTVNAYFPNDIWYEYGNGSLVQSVGTHQTLNAPF
DVINVHMXGGNIIPTQPTSSYVTPVDGIPITTKXSRTLPFELIIALDXSLQAXGQLXLDD
GESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTIXNNNYNGTASLIINSIQIYGSPSVQQ
VIVNGSPINSFNAVSDSTLSVSNLQLALDESLKXFWIXLK

Frame B:
knin*n*kknetfvfinyffcyciilxcwiiisiim*isrlfnsrxyknk*wl*gnt*py
fsrsiw*ryrtikfsinf*n*snfxsxny*pk*skmgsptnc*siswrksxfn*lyn*iy
k*siwfcsnsyfnw*sfi*ynstk*lfi*wfnlfkllf---

---lqlinnf*lvqv*wyhqfslkvlpq*mltsqmisgmnmvmvhwfnqlvpikl*mlhs
m*stfixvvvisfqlnqpphmlhqlmvfqlplkxlelyhln*llpwixhykqxvnyxwmm
vnqfkpmliintlsfnsmlxphhlhlptnynqpxsitiimvpll*slilskftvrhqfnk
sllmvaqsihlmlfxiqlslfqiynll*mnp*sxfglx*k

Frame C:
ki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLI
SAGPYGNDIEQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGENPXSTDYIIEFT
NNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYL---

---cn*stifswyrfngitsfhsrcyhsecllpk*ylv*iw*wfigsiswypsnfkcsir
cnqrsyxww*yhsnstnllicyts*wysnyh*nx*nfti*idyclgxfitsxwsiixg*w
*insnlc***ilfhsirccxltificlqitinhxq*ql*wyrffnh*fypnlrfaissts
hc*w*pnqfi*ccfxfnslcfkfttcfr*ilevildxikn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHE219 (SHE219Q) /CSM/SH/SHE2-A/SHE219Q.Seq.d/ 2002 0.0
CHR857 (CHR857Q) /CSM/CH/CHR8-C/CHR857Q.Seq.d/ 1197 0.0
AHN661 (AHN661Q) /CSM/AH/AHN6-C/AHN661Q.Seq.d/ 1197 0.0
AHF719 (AHF719Q) /CSM/AH/AHF7-A/AHF719Q.Seq.d/ 1197 0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/ 1189 0.0
SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/ 1185 0.0
CHG312 (CHG312Q) /CSM/CH/CHG3-A/CHG312Q.Seq.d/ 1185 0.0
CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/ 1183 0.0
CHR512 (CHR512Q) /CSM/CH/CHR5-A/CHR512Q.Seq.d/ 1183 0.0
CHR320 (CHR320Q) /CSM/CH/CHR3-A/CHR320Q.Seq.d/ 1183 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 34 1.3 8
AA550593|AA550593.1 1758m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1758m, DNA sequence. 40 1.4 2
AL449924|AL449924.1 Streptococcus pneumoniae serotype 19F *** SEQUENCING IN PROGRESS *** from clone G54. 36 2.2 4
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 32 3.1 2
AC137667|AC137667.18 Medicago truncatula clone mth2-30h5, complete sequence. 38 3.3 4
AR544895|AR544895.1 Sequence 26 from patent US 6747137. 40 6.1 2
DR573447|DR573447.1 WS00734.B21_O19 WS-PS-N-A-8 Picea glauca cDNA clone WS00734_O19 3, mRNA sequence. 44 6.7 1
AJ013037|AJ013037.1 Entamoeba histolytica EST EhEST329. 44 6.7 1
BE323805|BE323805.2 NF010E10PL1F1071 Phosphate starved leaf Medicago truncatula cDNA clone NF010E10PL 5', mRNA sequence. 44 6.7 1
AC017216|AC017216.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 44 6.7 1
dna update 2006. 2.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB000967_1(AB000967|pid:none) Coturnix japonica GAAI mRNA for ac... 117 9e-25
AF118226_1(AF118226|pid:none) Hordeum vulgare high pI alpha-gluc... 115 4e-24
(Q43763) RecName: Full=Alpha-glucosidase; EC=3.2.1.20; ... 111 4e-23
AF016833_1(AF016833|pid:none) Homo sapiens maltase-glucoamylase ... 111 5e-23
EU937530_1(EU937530|pid:none) Mus musculus sucrase-isomaltase mR... 110 9e-23
(O43451) RecName: Full=Maltase-glucoamylase, intestinal; Include... 109 2e-22
AB057452_1(AB057452|pid:none) Physcomitrella patens subsp. paten... 108 3e-22
L25926_1(L25926|pid:none) Rat sucrase-isomaltase (SI) mRNA, comp... 105 2e-21
(P23739) RecName: Full=Sucrase-isomaltase, intestinal; Contains:... 105 2e-21
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a... 102 2e-20
protein update 2009. 4.17
PSORT

psg: 1.02 gvh: 0.72 alm: 0.41 top: 0.27 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SHE219 is exc

5' end seq. ID SHE219F
5' end seq.
>SHE219F.Seq
AAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATTTTTT
TTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATATCCAG
GTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAACCTTA
TTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACTTTTGAAA
CTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAAGTCCCAC
CAACTGTTAATCAATTAGTTGGAGAAAATCCANATTCAACTGATTATATAATTGAATTTA
CAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTTAATA
CAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTANNNN
NNNNNN
Length of 5' end seq. 486
3' end seq. ID SHE219Z
3' end seq.
>SHE219Z.Seq
NNNNNNNNNNTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACC
AGTTTTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGA
ATATGGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATT
CGATGTAATCAACGTTCATATGNGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTC
ATATGTTACACCAGTTGATGGTATTCCAATTACCACTAAAATNTCTAGAACTTTACCATT
TGAATTGATTATTGCCTTGGATTNTTCATTACAAGCAANTGGTCAATTATTNTTGGATGA
TGGTGAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGT
NTCCTCACCATCTTCATCTGCCTACAAATTACAATCAACCATTNTCAATAACAATTATAA
TGGTACCGCTTCTTTAATCATTAATTCTATCCAAATTTACGGTTCGCCATCAGTTCAACA
AGTCATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCNGATTCAACTCTCTC
TGTTTCAAATTTACAACTTGCTTTAGATGAATCCTTGAAGTNATTTTGGATTANATTAAA
AAT
Length of 3' end seq. 663
Connected seq. ID SHE219P
Connected seq.
>SHE219P.Seq
AAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATTTTTT
TTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATATCCAG
GTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAACCTTA
TTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACTTTTGAAA
CTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAAGTCCCAC
CAACTGTTAATCAATTAGTTGGAGAAAATCCANATTCAACTGATTATATAATTGAATTTA
CAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTTAATA
CAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTA----
------TTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTT
TTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATAT
GGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGAT
GTAATCAACGTTCATATGNGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATAT
GTTACACCAGTTGATGGTATTCCAATTACCACTAAAATNTCTAGAACTTTACCATTTGAA
TTGATTATTGCCTTGGATTNTTCATTACAAGCAANTGGTCAATTATTNTTGGATGATGGT
GAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTNTCC
TCACCATCTTCATCTGCCTACAAATTACAATCAACCATTNTCAATAACAATTATAATGGT
ACCGCTTCTTTAATCATTAATTCTATCCAAATTTACGGTTCGCCATCAGTTCAACAAGTC
ATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCNGATTCAACTCTCTCTGTT
TCAAATTTACAACTTGCTTTAGATGAATCCTTGAAGTNATTTTGGATTANATTAAAAAT
Length of connected seq. 1129
Full length Seq ID -
Full length Seq. -
Length of full length seq. -