SHE191
Library SH
(Link to library)
Clone ID SHE191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHE191 (SHE191Q) /CSM/SH/SHE1-D/SHE191Q.Seq.d/
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTAX
XXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSII---


Translated Amino Acid sequence (All Frames)
Frame A:
iikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnled
rrsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfk
rnsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sici
dlsitkeytytil*ecsftscllfnd*yifsinkfr*yn---


Frame B:
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSII---


Frame C:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyfqy**i*iv*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/ 1306 0.0
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/ 1306 0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/ 1306 0.0
SHE452 (SHE452Q) /CSM/SH/SHE4-C/SHE452Q.Seq.d/ 1306 0.0
SHE191 (SHE191Q) /CSM/SH/SHE1-D/SHE191Q.Seq.d/ 1306 0.0
SHB243 (SHB243Q) /CSM/SH/SHB2-B/SHB243Q.Seq.d/ 1306 0.0
CHO318 (CHO318Q) /CSM/CH/CHO3-A/CHO318Q.Seq.d/ 1306 0.0
CHI453 (CHI453Q) /CSM/CH/CHI4-C/CHI453Q.Seq.d/ 1306 0.0
VHL410 (VHL410Q) /CSM/VH/VHL4-A/VHL410Q.Seq.d/ 1304 0.0
VHC109 (VHC109Q) /CSM/VH/VHC1-A/VHC109Q.Seq.d/ 1302 0.0

own update 2002.12. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CR450713|CR450713.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 8e-04 8
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 34 0.007 11
BX276109|BX276109.11 Mouse DNA sequence from clone RP23-209P8 on chromosome 2. 50 0.015 4
AC168241|AC168241.2 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces. 52 0.016 1
AC118642|AC118642.11 Mus musculus chromosome 18, clone RP24-112L21, complete sequence. 42 0.057 4
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09. 50 0.063 1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10. 50 0.063 1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.063 1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.063 1
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16. 50 0.063 1
dna update 2006. 2.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 414 e-115
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 165 9e-40
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 165 9e-40
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 165 9e-40
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 165 9e-40
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 165 9e-40
CR858798_1(CR858798|pid:none) Pongo abelii mRNA; cDNA DKFZp468B1... 153 4e-36
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746... 64 5e-09
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 63 7e-09
AY371725_1(AY371725|pid:none) Tetrahymena thermophila macronucle... 62 1e-08
protein update 2009. 4.17
PSORT

psg: 0.79 gvh: 0.25 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHE191 is nuc

5' end seq. ID SHE191F
5' end seq.
>SHE191F.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTAN
NNNNNNNNN
Length of 5' end seq. 669
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -