NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE184
Library SH
(Link to library)
Clone ID SHE184
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHE184 (SHE184Q) /CSM/SH/SHE1-D/SHE184Q.Seq.d/
XXXXXXXXXXTCAANTGCCTCAACAATTGCCTCATTAGTCCCTGGTACCNCAAGTGGTGG
TGGTGGNATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGNTAT
ACTTGGTNTNTTTGAAGACGATATTTTCTGGGGTGATAATGATGAANACTTTAGTGATAA
CC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---XASTIASLVPGTXSGGGGMGSFGGRSDEESSDPNXILGXFEDDIFWGDNDEXFSDN
Translated Amino Acid sequence (All Frames) 
Frame A:
---qxpqqlph*slvpqvvvvxwvhlvvdpmknqviqmxylvxlktifsgvimmxtlvit


Frame B:
---xclnnclispwyxkwwwwxgfiwwsir*rik*skxytwxx*rryflg****xl***


Frame C:
---XASTIASLVPGTXSGGGGMGSFGGRSDEESSDPNXILGXFEDDIFWGDNDEXFSDN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE184 (SHE184Q) /CSM/SH/SHE1-D/SHE184Q.Seq.d/                        299   7e-81
CHD635 (CHD635Q) /CSM/CH/CHD6-B/CHD635Q.Seq.d/                        291   2e-78
CHA477 (CHA477Q) /CSM/CH/CHA4-D/CHA477Q.Seq.d/                        291   2e-78
CFI581 (CFI581Q) /CSM/CF/CFI5-D/CFI581Q.Seq.d/                        291   2e-78
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        289   7e-78
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/                        289   7e-78
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/                        289   7e-78
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/                        289   7e-78
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                        289   7e-78
SSH577 (SSH577Q) /CSM/SS/SSH5-D/SSH577Q.Seq.d/                        289   7e-78
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   289   1e-74  1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   289   1e-74  1
AC177388|AC177388.1 Strongylocentrotus purpuratus clone R3-1031J12, WORKING DRAFT SEQUENCE, 16 unordered pieces.    38   4.7    3
dna update 2006. 2.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    69   4e-11
protein update 2009. 1.15
PSORT 

 psg: 0.90  gvh: 0.56  alm: 0.52  top: 0.27  tms: 0.00  mit: 0.20  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHE184 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHE184Z
3' end seq. 
>SHE184Z.Seq
NNNNNNNNNNTCAANTGCCTCAACAATTGCCTCATTAGTCCCTGGTACCNCAAGTGGTGG
TGGTGGNATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGNTAT
ACTTGGTNTNTTTGAAGACGATATTTTCTGGGGTGATAATGATGAANACTTTAGTGATAA
CC
Length of 3' end seq. 182
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -