>SHE176 (SHE176Q) /CSM/SH/SHE1-D/SHE176Q.Seq.d/
XXXXXXXXXXGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGGCTGAAG
AAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAA
CTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAG
CTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAAC
ATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGG
ACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTAC
AACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAA
CAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAG
ATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTG
AAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAG
ATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAA
ATATTCAACAGNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATC
AACAATTATTAGAACAAGAACAAAATCAAAAAGNATTNATCATTCTTTCTTTT

---kkfiipi*IKQFKRAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQA
QHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQ
QLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVE
KAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQQXQQIQEQQDKLNQEKNQ
QLLEQEQNQKXXIILSF

Frame A:
---kkfiipi*IKQFKRAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQA
QHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQ
QLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVE
KAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQQXQQIQEQQDKLNQEKNQ
QLLEQEQNQKXXIILSF


Frame B:
---rns*fqfe*sssrglkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnkl
niynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiyn
nlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlk
klnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnxnnksknnkin*ikkkin
ny*nknkikkxxsffl


Frame C:
---eihnsnlnkavqeg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tss
tftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kftt
t**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*k
sst*igc*ig*k**tresr*efssrettis*pn*ksikkystxttnprttr*iksrkkst
iirtrtkskxixhsff

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE176 (SHE176Q) /CSM/SH/SHE1-D/SHE176Q.Seq.d/                        739   0.0
SHB457 (SHB457Q) /CSM/SH/SHB4-C/SHB457Q.Seq.d/                        739   0.0
CHR233 (CHR233Q) /CSM/CH/CHR2-B/CHR233Q.Seq.d/                        739   0.0
AHQ546 (AHQ546Q) /CSM/AH/AHQ5-B/AHQ546Q.Seq.d/                        739   0.0
AHK635 (AHK635Q) /CSM/AH/AHK6-B/AHK635Q.Seq.d/                        739   0.0
AHF785 (AHF785Q) /CSM/AH/AHF7-D/AHF785Q.Seq.d/                        739   0.0
AHE624 (AHE624Q) /CSM/AH/AHE6-A/AHE624Q.Seq.d/                        739   0.0
CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/                        737   0.0
CHS435 (CHS435Q) /CSM/CH/CHS4-B/CHS435Q.Seq.d/                        733   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        724   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   656   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.002  7
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    38   0.14   13
AZ813205|AZ813205.1 2M0080C24F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0080C24 F, DNA sequence.    38   0.21   2
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence.    44   0.23   2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.29   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.29   1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence.    48   0.29   1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence.    48   0.29   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   241   2e-65
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.0
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.0
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    35   2.0
AE001272_3(AE001272|pid:none) Lactococcus lactis DPC3147 plasmid...    33   9.8
CP000487_662(CP000487|pid:none) Campylobacter fetus subsp. fetus...    33   9.8

 psg: 0.47  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHE176 is nuc

>SHE176Z.Seq
NNNNNNNNNNGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGGCTGAAG
AAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAA
CTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAG
CTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAAC
ATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGG
ACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTAC
AACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAA
CAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAG
ATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTG
AAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAG
ATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAA
ATATTCAACAGNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATC
AACAATTATTAGAACAAGAACAAAATCAAAAAGNATTNATCATTCTTTCTTTT