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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE175
Library SH
(Link to library)
Clone ID SHE175
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16588-1
Original site URL
Representative seq. ID SHE175P
(Link to Original site)
Representative DNA sequence 
>SHE175 (SHE175Q) /CSM/SH/SHE1-D/SHE175Q.Seq.d/
AGATTATTTTTTTAAATTTTAAATTTTTATTCATAAAAAATAAAAAAAAACAAATCATAA
AAAAAAAAAAAAACCATTNCNCCCNTTTTTTTTTTTGNAANTTCCCCTTTTTAAAAAAAA
AAXXXXXXXXXXTCCAAATATACTCTACAATGCATGGAACGTCTTTTCAATGGTGGATGA
TGAATATGTAATTTCCACGGAAACATTCGAATTTGACATATCAGAATTCACAATGCAATC
TTTAAGTAACTACTTCATGGACCAATACTTCCTATTGATTGAAGCATTCAATGCCTCTGA
TGTGCAAACATTGTCAACTATTTCAATCGAGTTGTTGGATATCATCAACTACATGGATGA
AATTGCAAGTACGCAAAGTTCTCTTCAATTGGGGTTATGGACATACCGTGCTAGATTATG
GGCCTACCCAACCAACGATATCCCAACCCTTCAAAATAGTAGTAACTCAAATACCGCACC
ATACGAATTCAATGCTCGTAATGTCTTAACTTTATGGGGTCCTTCAAATTCTGTACTCCA
TGATTACGCTTTCAAACTATGGAGTGGTTTAGTAAGTGATTTCTATTCACCACGTTGGCA
ACTCTTTTTAAAGTCATTAGTGCAATCTGTTGAAAATCGTAAACCATTCAATAAGGAATC
ATTCAATAGAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
IIFLNFKFLFIKNKKKQIIKKKKNHXXXFFFXXFPFLKKK---

---PNILYNAWNVFSMVDDEYVISTETFEFDISEFTMQSLSNYFMDQYFLLIEAFNASDV
QTLSTISIELLDIINYMDEIASTQSSLQLGLWTYRARLWAYPTNDIPTLQNSSNSNTAPY
EFNARNVLTLWGPSNSVLHDYAFKLWSGLVSDFYSPRWQLFLKSLVQSVENRKPFNKESF
NR
Translated Amino Acid sequence (All Frames) 
Frame A:
rlff*ilnfys*kikknks*kkkktixpxfffxxspf*kk---

---skytlqcmerlfngg**icnfhgniri*hirihnaifk*llhgpilpid*siqcl*c
anivnyfnrvvgyhqlhg*nckyakfssigvmdipc*imglpnqrypnpsk***lkyrti
riqcs*clnfmgsfkfctp*lrfqtmewfsk*flfttlatlfkvisaic*ks*tiq*gii
q*n

Frame B:
dyffkf*ifihkk*kktnhkkkkkpxxpffflxxplfkkk---

---PNILYNAWNVFSMVDDEYVISTETFEFDISEFTMQSLSNYFMDQYFLLIEAFNASDV
QTLSTISIELLDIINYMDEIASTQSSLQLGLWTYRARLWAYPTNDIPTLQNSSNSNTAPY
EFNARNVLTLWGPSNSVLHDYAFKLWSGLVSDFYSPRWQLFLKSLVQSVENRKPFNKESF
NR

Frame C:
IIFLNFKFLFIKNKKKQIIKKKKNHXXXFFFXXFPFLKKK---

---qiystmhgtsfqwwmmnm*fprkhsnltyqnsqcnl*vttswtntsy*lkhsmplmc
khcqlfqsscwissttwmklqvrkvlfnwgyghtvldygptqptisqpfkivvtqiphht
nsmlvms*lygvlqilysmitlsnygvv**visihhvgnsf*sh*cnllkivnhsirnhs
ie
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH504 (SLH504Q) /CSM/SL/SLH5-A/SLH504Q.Seq.d/                       1070   0.0
SHE175 (SHE175Q) /CSM/SH/SHE1-D/SHE175Q.Seq.d/                       1070   0.0
SHD225 (SHD225Q) /CSM/SH/SHD2-B/SHD225Q.Seq.d/                       1070   0.0
CHS129 (CHS129Q) /CSM/CH/CHS1-B/CHS129Q.Seq.d/                       1070   0.0
CHR606 (CHR606Q) /CSM/CH/CHR6-A/CHR606Q.Seq.d/                       1070   0.0
CHQ605 (CHQ605Q) /CSM/CH/CHQ6-A/CHQ605Q.Seq.d/                       1070   0.0
CFF471 (CFF471Q) /CSM/CF/CFF4-C/CFF471Q.Seq.d/                       1070   0.0
AHK591 (AHK591Q) /CSM/AH/AHK5-D/AHK591Q.Seq.d/                       1070   0.0
AHH868 (AHH868Q) /CSM/AH/AHH8-C/AHH868Q.Seq.d/                       1070   0.0
AHF813 (AHF813Q) /CSM/AH/AHF8-A/AHF813Q.Seq.d/                       1070   0.0
own update 2002.10.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

G65042|G65042.1 DH0622 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site.   309   e-149  2
AC096786|AC096786.10 Rattus norvegicus clone CH230-4K22, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44   0.011  2
BH529343|BH529343.1 BOHQY56TR BOHQ Brassica oleracea genomic clone BOHQY56, DNA sequence.    52   0.016  1
AP007294|AP007294.1 Lotus corniculatus var. japonicus genomic DNA, clone:LjT42E17, TM0355.    52   0.016  1
AL031054|AL031054.1 Human DNA sequence from clone 48G12 on chromosome Xq27.1-27.3. Contains STSs and GSSs.    52   0.016  1
CV653915|CV653915.1 TgESTzyr93e08.y1 Tg COUG Tachyzoite cDNA Library Toxoplasma gondii cDNA clone TgESTzyr93e08.y1 5', mRNA sequence.    50   0.063  1
AW576527|AW576527.1 UI-HF-BN0-ali-c-10-0-UI.s1 NIH_MGC_50 Homo sapiens cDNA clone IMAGE:3079675 3', mRNA sequence.    50   0.063  1
CA448715|CA448715.1 UI-H-EI0-ayo-j-22-0-UI.s1 NCI_CGAP_EI0 Homo sapiens cDNA clone UI-H-EI0-ayo-j-22-0-UI 3', mRNA sequence.    50   0.063  1
AI652013|AI652013.1 wb51g11.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE:2309252 3' similar to TR:Q63614 Q63614 TYROSINE KINASE RECEPTOR ;, mRNA sequence.    50   0.063  1
BU147149|BU147149.1 AGENCOURT_8726229 NIH_MGC_47 Homo sapiens cDNA clone IMAGE:6341093 5', mRNA sequence.    50   0.063  1
dna update 2006. 2.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF331669_1(AF331669|pid:none) Dromaius novaehollandiae lysosomal...    98   2e-19
AP008210_2108(AP008210|pid:none) Oryza sativa (japonica cultivar...    95   2e-18
AK220789_1(AK220789|pid:none) Arabidopsis thaliana mRNA for alph...    85   2e-15
(P54802) RecName: Full=Alpha-N-acetylglucosaminidase;          E...    84   5e-15
L78465_1(L78465|pid:none) Human alpha-N-acetylglucosaminidase (u...    84   5e-15
AE015928_3588(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    83   8e-15
AP006841_677(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ...    79   1e-13
CP000312_824(CP000312|pid:none) Clostridium perfringens SM101, c...    79   1e-13
CR626927_576(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ...    79   1e-13
Y18209_1(Y18209|pid:none) Nicotiana tabacum mRNA for alpha-N-ace...    76   8e-13
protein update 2009. 4.17
PSORT 

 psg: 0.57  gvh: 0.34  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHE175 is nuc
5' end seq. ID SHE175F
5' end seq. 
>SHE175F.Seq
AGATTATTTTTTTAAATTTTAAATTTTTATTCATAAAAAATAAAAAAAAACAAATCATAA
AAAAAAAAAAAAACCATTNCNCCCNTTTTTTTTTTTGNAANTTCCCCTTTTTAAAAAAAA
AANNNNNNNNNN
Length of 5' end seq. 132
3' end seq. ID SHE175Z
3' end seq. 
>SHE175Z.Seq
NNNNNNNNNNTCCAAATATACTCTACAATGCATGGAACGTCTTTTCAATGGTGGATGATG
AATATGTAATTTCCACGGAAACATTCGAATTTGACATATCAGAATTCACAATGCAATCTT
TAAGTAACTACTTCATGGACCAATACTTCCTATTGATTGAAGCATTCAATGCCTCTGATG
TGCAAACATTGTCAACTATTTCAATCGAGTTGTTGGATATCATCAACTACATGGATGAAA
TTGCAAGTACGCAAAGTTCTCTTCAATTGGGGTTATGGACATACCGTGCTAGATTATGGG
CCTACCCAACCAACGATATCCCAACCCTTCAAAATAGTAGTAACTCAAATACCGCACCAT
ACGAATTCAATGCTCGTAATGTCTTAACTTTATGGGGTCCTTCAAATTCTGTACTCCATG
ATTACGCTTTCAAACTATGGAGTGGTTTAGTAAGTGATTTCTATTCACCACGTTGGCAAC
TCTTTTTAAAGTCATTAGTGCAATCTGTTGAAAATCGTAAACCATTCAATAAGGAATCAT
TCAATAGAAT
Length of 3' end seq. 550
Connected seq. ID SHE175P
Connected seq. 
>SHE175P.Seq
AGATTATTTTTTTAAATTTTAAATTTTTATTCATAAAAAATAAAAAAAAACAAATCATAA
AAAAAAAAAAAAACCATTNCNCCCNTTTTTTTTTTTGNAANTTCCCCTTTTTAAAAAAAA
AA----------TCCAAATATACTCTACAATGCATGGAACGTCTTTTCAATGGTGGATGA
TGAATATGTAATTTCCACGGAAACATTCGAATTTGACATATCAGAATTCACAATGCAATC
TTTAAGTAACTACTTCATGGACCAATACTTCCTATTGATTGAAGCATTCAATGCCTCTGA
TGTGCAAACATTGTCAACTATTTCAATCGAGTTGTTGGATATCATCAACTACATGGATGA
AATTGCAAGTACGCAAAGTTCTCTTCAATTGGGGTTATGGACATACCGTGCTAGATTATG
GGCCTACCCAACCAACGATATCCCAACCCTTCAAAATAGTAGTAACTCAAATACCGCACC
ATACGAATTCAATGCTCGTAATGTCTTAACTTTATGGGGTCCTTCAAATTCTGTACTCCA
TGATTACGCTTTCAAACTATGGAGTGGTTTAGTAAGTGATTTCTATTCACCACGTTGGCA
ACTCTTTTTAAAGTCATTAGTGCAATCTGTTGAAAATCGTAAACCATTCAATAAGGAATC
ATTCAATAGAAT
Length of connected seq. 662
Full length Seq ID -
Full length Seq. -
Length of full length seq. -