>AFJ241 (AFJ241Q) /CSM/AF/AFJ2-B/AFJ241Q.Seq.d/
XXXXXXXXXXGTCACCACTGNAGTCAAGTCCGTTGAGATGCATCANGAATCTCTTCCAGA
GGCCGTCCCAGGAGACAACGTTGGATTCAACGTCAAGAACGTCTCCGTCAAGGATATTCG
TCGTGGATCCGTNTGCTCCGAT

---SPLXSSPLRCIXNLFQRPSQETTLDSTSRTSPSRIFVVDPXAP

Frame A:
---SPLXSSPLRCIXNLFQRPSQETTLDSTSRTSPSRIFVVDPXAP


Frame B:
---hhxsqvr*dasxissrgrprrqrwiqrqerlrqgysswirxlr


Frame C:
---ttxvksvemhxeslpeavpgdnvgfnvknvsvkdirrgsvcsd

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ241 (AFJ241Q) /CSM/AF/AFJ2-B/AFJ241Q.Seq.d/                        244   3e-64

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ814505|BJ814505.1 Caenorhabditis elegans cDNA clone:yk1543c12 : 3' end.   242   1e-60  1
BJ813835|BJ813835.1 Caenorhabditis elegans cDNA clone:yk1483g05 : 3' end.   242   1e-60  1
BJ776574|BJ776574.1 Caenorhabditis elegans cDNA clone:yk1378d01 : 3' end.   242   1e-60  1
AU219225|AU219225.1 Caenorhabditis elegans cDNA clone:yk874f10 : 3' end, single read.   242   1e-60  1
AU217661|AU217661.1 Caenorhabditis elegans cDNA clone:yk854b01 : 3' end, single read.   242   1e-60  1
AU212996|AU212996.1 Caenorhabditis elegans cDNA clone:yk792g11 : 3' end, single read.   242   1e-60  1
BJ133770|BJ133770.1 Caenorhabditis elegans cDNA clone:yk1080h03 : 3' end, single read.   242   1e-60  1
BJ106969|BJ106969.1 Caenorhabditis elegans cDNA clone:yk1091a09 : 5' end, single read.   242   1e-60  1
BJ782291|BJ782291.1 Caenorhabditis elegans cDNA clone:yk1509c03 : 3' end.   242   1e-60  1
AU216948|AU216948.1 Caenorhabditis elegans cDNA clone:yk844a06 : 3' end, single read.   242   1e-60  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU726793_1(EU726793|pid:none) Caenorhabditis brenneri clone 9B2C...    86   3e-16
(P53013) RecName: Full=Elongation factor 1-alpha;          Short...    86   3e-16
DQ250681_1(DQ250681|pid:none) Ancylostoma ceylanicum translation...    84   1e-15
(Q2HJN6) RecName: Full=Elongation factor 1-alpha 3;          Sho...    84   1e-15
(Q2HJN8) RecName: Full=Elongation factor 1-alpha 2;          Sho...    84   1e-15
AY928339_1(AY928339|pid:none) Oscheius tipulae clone pA1 eukaryo...    84   1e-15
AJ419177_1(AJ419177|pid:none) Ostertagia ostertagi partial mRNA ...    84   2e-15
EU152294_1(EU152294|pid:none) Dictyocaulus viviparus elongation ...    83   3e-15
(Q2HJN9) RecName: Full=Elongation factor 1-alpha 4;          Sho...    82   7e-15
DQ352829_1(DQ352829|pid:none) Sporisorium scitamineum isolate Br...    81   1e-14

 psg: 0.65  gvh: 0.33  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFJ241 is mit

>AFJ241Z.Seq
----------GTCACCACTGNAGTCAAGTCCGTTGAGATGCATCANGAATCTCTTCCAGA
GGCCGTCCCAGGAGACAACGTTGGATTCAACGTCAAGAACGTCTCCGTCAAGGATATTCG
TCGTGGATCCGTNTGCTCCGAT