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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE160
Library SH
(Link to library)
Clone ID SHE160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14575-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHE160 (SHE160Q) /CSM/SH/SHE1-C/SHE160Q.Seq.d/
XXXXXXXXXXTAAAGATTGGAGCTGATCTATCAAAGANAAGAGCAGGCTGCTTTTTTAGA
GGTTGAGAGATNAGAAGAGCAAAANAGAATCCGTGATCTTGAANTNCNNCGACNTNGTAG
AGGAGAAAAGANAAGAANCAAAGAGGNAANNAAGAAAGAGAAGGTGAGNAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---RLELIYQRXEQAAFLEVERXEEQXRIRDLEXXRXXRGEKXRXKEXXKKEKVX
Translated Amino Acid sequence (All Frames) 
Frame A:
---kdws*sikxksrllf*rlrdxkskxesvilxxxdxveekrxexkrxxrkrr*x


Frame B:
---kigadlskxragcffrg*exrrakxnp*s*xxxtx*rrkxkxqrgxxeregex


Frame C:
---RLELIYQRXEQAAFLEVERXEEQXRIRDLEXXRXXRGEKXRXKEXXKKEKVX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE160 (SHE160Q) /CSM/SH/SHE1-C/SHE160Q.Seq.d/                        230   5e-60
VSJ523 (VSJ523Q) /CSM/VS/VSJ5-A/VSJ523Q.Seq.d/                         32   2.4
VHH207 (VHH207Q) /CSM/VH/VHH2-A/VHH207Q.Seq.d/                         32   2.4
VHG389 (VHG389Q) /CSM/VH/VHG3-D/VHG389Q.Seq.d/                         32   2.4
VFO889 (VFO889Q) /CSM/VF/VFO8-D/VFO889Q.Seq.d/                         32   2.4
VFI825 (VFI825Q) /CSM/VF/VFI8-B/VFI825Q.Seq.d/                         32   2.4
VFI508 (VFI508Q) /CSM/VF/VFI5-A/VFI508Q.Seq.d/                         32   2.4
VFE819 (VFE819Q) /CSM/VF/VFE8-A/VFE819Q.Seq.d/                         32   2.4
CHC421 (CHC421Q) /CSM/CH/CHC4-A/CHC421Q.Seq.d/                         32   2.4
VHP102 (VHP102Q) /CSM/VH/VHP1-A/VHP102Q.Seq.d/                         30   9.7
own update 2003. 6. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF081799|AF081799.1 Dictyostelium discoideum developmental protein DG1071 (DG1071) gene, partial cds.    66   3e-25  3
AC095081|AC095081.6 Rattus norvegicus clone CH230-7B24, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42   3.5    1
AY455861|AY455861.1 Rattus norvegicus SAH (Sah) gene, complete cds.    42   3.5    1
dna update 2006. 2.10
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 105,233,781
protein update 2009. 5.29
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHE160 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHE160Z
3' end seq. 
>SHE160Z.Seq
NNNNNNNNNNTAAAGATTGGAGCTGATCTATCAAAGANAAGAGCAGGCTGCTTTTTTAGA
GGTTGAGAGATNAGAAGAGCAAAANAGAATCCGTGATCTTGAANTNCNNCGACNTNGTAG
AGGAGAAAAGANAAGAANCAAAGAGGNAANNAAGAAAGAGAAGGTGAGNAA
Length of 3' end seq. 171
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -