SHE141
Library SH
(Link to library)
Clone ID SHE141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID SHE141P
(Link to Original site)
Representative DNA sequence
>SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAA
CCTTTTGTXXXXXXXXXXGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTT
CAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTG
AAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTN
TCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTA
GTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATA
GTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTAT
TATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAAT
TATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAA
ATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTC
TTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAA
AAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
iylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNP
PTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHS
DEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITG
SYLRLFGGPNFLINSIDVNKPF---

---ESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNAS
LTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXL
FNSTSFQYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGALAYY
FKIPFRVKKFIGKKF*kkkckfkitnhicvk


Translated Amino Acid sequence (All Frames)
Frame A:
iylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNP
PTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHS
DEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITG
SYLRLFGGPNFLINSIDVNKPF---

---ervhsllqhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmq
a*qfhqklflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxs
yltqhhfnimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvlllsvllpi
tlkylfv*knl*vknfkkknvnlksqityv*n

Frame B:
si**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*il
qhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiq
mnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*slla
hi*dylvvlislliplm*inll---

---reftlcynihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqck
lnsfirncssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixp
i*lniisi*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcscyrcscll
l*ntfscekiyr*kilkkkm*i*nhkshmck

Frame C:
lfnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifness
ntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr
*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywl
ifkiiwws*fpy*fh*ck*tfc---

---ESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNAS
LTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXL
FNSTSFQYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGALAYY
FKIPFRVKKFIGKKF*kkkckfkitnhicvk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/ 1300 0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/ 1148 0.0
SHB354 (SHB354Q) /CSM/SH/SHB3-C/SHB354Q.Seq.d/ 1148 0.0
SHA494 (SHA494Q) /CSM/SH/SHA4-D/SHA494Q.Seq.d/ 1148 0.0
CHM762 (CHM762Q) /CSM/CH/CHM7-C/CHM762Q.Seq.d/ 1148 0.0
AHO494 (AHO494Q) /CSM/AH/AHO4-D/AHO494Q.Seq.d/ 1148 0.0
AHN746 (AHN746Q) /CSM/AH/AHN7-B/AHN746Q.Seq.d/ 1148 0.0
AHN424 (AHN424Q) /CSM/AH/AHN4-A/AHN424Q.Seq.d/ 1148 0.0
AHM260 (AHM260Q) /CSM/AH/AHM2-C/AHM260Q.Seq.d/ 1148 0.0
AHK739 (AHK739Q) /CSM/AH/AHK7-B/AHK739Q.Seq.d/ 1148 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds. 1118 0.0 2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds. 1118 0.0 2
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds. 80 1e-30 6
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 50 0.12 1
AL935175|AL935175.6 Mouse DNA sequence from clone RP23-397E13 on chromosome 2. 38 0.13 5
AC146777|AC146777.27 Medicago truncatula clone mth2-173c10, complete sequence. 36 0.19 7
CT025578|CT025578.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 0.26 2
CT573049|CT573049.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-18H22. 36 0.26 2
BX255889|BX255889.7 Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17. 36 0.26 2
AX392733|AX392733.1 Sequence 23 from Patent WO0212526. 44 0.34 6
dna update 2006. 2. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli... 319 1e-85
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS... 310 6e-83
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS... 310 6e-83
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS... 310 6e-83
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS... 310 6e-83
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS... 310 6e-83
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS... 309 1e-82
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS... 296 7e-79
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS... 296 7e-79
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS... 296 7e-79
protein update 2009. 4.16
PSORT

psg: 1.02 gvh: 0.77 alm: 0.33 top: 0.07 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
20.0 %: cytoplasmic
12.0 %: vacuolar
8.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for SHE141 is exc

5' end seq. ID SHE141F
5' end seq.
>SHE141F.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAA
CCTTTTGTNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID SHE141Z
3' end seq.
>SHE141Z.Seq
NNNNNNNNNNGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCA
AGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAA
ATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCA
AGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCA
CCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACT
GATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTC
CTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCA
TCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTA
ATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTAT
TACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAA
TGTAAATTTAAAATCACAAATCACATATGTGTAAAAT
Length of 3' end seq. 637
Connected seq. ID SHE141P
Connected seq.
>SHE141P.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAA
CCTTTTGT----------GAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTT
CAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTG
AAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTN
TCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTA
GTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATA
GTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTAT
TATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAAT
TATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAA
ATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTC
TTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAA
AAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAAT
Length of connected seq. 1235
Full length Seq ID -
Full length Seq. -
Length of full length seq. -