SHE116
Library SH
(Link to library)
Clone ID SHE116
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13270-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHE116 (SHE116Q) /CSM/SH/SHE1-A/SHE116Q.Seq.d/
ATTATCATTTTATATTTTACTTAATATTTATTTAATATATAAAAACTTTATTTTTCAAAT
CATATATCACATTATTATTATAATAATATAATAATAATAATAATTAATAATTAATAAAAA
AAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LSFYILLNIYLIYKNFIFQIIYHIIIIII*****liinkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
iiilyft*ylfni*klyfsnhishyyynniiiiiinn**kk---


Frame B:
LSFYILLNIYLIYKNFIFQIIYHIIIIII*****liinkkk---


Frame C:
yhfifylifi*yiktlffksyitlll**ynnnnn**likk---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1139342423.dictycdb.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1139342423.dictycdb.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2006. 2. 9
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 60,530,501
protein update 2009. 4.16
PSORT

psg: 0.88 gvh: 0.30 alm: 0.33 top: 0.57 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: mitochondrial
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SHE116 is cyt

5' end seq. ID SHE116F
5' end seq.
>SHE116F.Seq
ATTATCATTTTATATTTTACTTAATATTTATTTAATATATAAAAACTTTATTTTTCAAAT
CATATATCACATTATTATTATAATAATATAATAATAATAATAATTAATAATTAATAAAAA
AAAAANNNNNNNNNN
Length of 5' end seq. 135
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -