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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ209
Library AF
(Link to library)
Clone ID AFJ209
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13918-1
Original site URL
Representative seq. ID AFJ209F
(Link to Original site)
Representative DNA sequence 
>AFJ209 (AFJ209Q) /CSM/AF/AFJ2-A/AFJ209Q.Seq.d/
ATCAAAGNGAATATATTTGNGTTAAAGATAAAAGAAAAGANTNTNTTAGNGGATTCAGNG
GTAGNGCTGGTTGNGTTGTAATCNCATTAGATAATCAATTNTTATGGNCTGATGGTCGTT
NTTGGTTNCAAGCTGAAAAAGAATTANAATCAAATTGGAAAATAATGAAAGATCGNGTTG
TTGGNGANCCANCAATTCAAGATNGGTTNTTATCTAATTTAAATAAAGAAAATAAAGTTG
GTATTGATAGTAGATTAATTTCAAAAGGTTNTTATGATAGTATGAAATTAGTNTTAAAAG
ANAAATCAATNGATNTTAAATTTGATGAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
QXEYIXVKDKRKXXXXGFXGXAGXVVIXLDNQXLWXDGRXWXQAEKELXSNWKIMKDRVV
GXPXIQDXXLSNLNKENKVGIDSRLISKGXYDSMKLVLKXKSXDXKFD---
Translated Amino Acid sequence (All Frames) 
Frame A:
ikxnifxlkikekxxlxdsxvxlvxl*sh*iinxyglmvvxgxklkknxnqigk**kixl
lxxxqfkxgxyli*ikkiklvlivd*fqkvxmiv*n*x*kxnqxxlnlm---


Frame B:
skxiylx*r*kkrxx*xiqx*xwlxcnxir*sixmx*wsxlvxs*krixiklennersxc
wxxxnsrxvxi*fk*rk*swy***infkrxl**yeisxkrxinxx*i*---


Frame C:
QXEYIXVKDKRKXXXXGFXGXAGXVVIXLDNQXLWXDGRXWXQAEKELXSNWKIMKDRVV
GXPXIQDXXLSNLNKENKVGIDSRLISKGXYDSMKLVLKXKSXDXKFD---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ209 (AFJ209Q) /CSM/AF/AFJ2-A/AFJ209Q.Seq.d/                        496   e-139
VHK453 (VHK453Q) /CSM/VH/VHK4-C/VHK453Q.Seq.d/                        488   e-137
VHC829 (VHC829Q) /CSM/VH/VHC8-B/VHC829Q.Seq.d/                        488   e-137
VFO578 (VFO578Q) /CSM/VF/VFO5-D/VFO578Q.Seq.d/                        488   e-137
VFN453 (VFN453Q) /CSM/VF/VFN4-C/VFN453Q.Seq.d/                        488   e-137
VFM742 (VFM742Q) /CSM/VF/VFM7-B/VFM742Q.Seq.d/                        488   e-137
VFA608 (VFA608Q) /CSM/VF/VFA6-A/VFA608Q.Seq.d/                        488   e-137
SFJ619 (SFJ619Q) /CSM/SF/SFJ6-A/SFJ619Q.Seq.d/                        488   e-137
SFJ519 (SFJ519Q) /CSM/SF/SFJ5-A/SFJ519Q.Seq.d/                        488   e-137
SFH319 (SFH319Q) /CSM/SF/SFH3-A/SFH319Q.Seq.d/                        488   e-137
own update 2002.10.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          30   0.015  12
CP000015|CP000015.1 Borrelia garinii PBi plasmid lp54, complete sequence.    44   0.027  2
AF288092|AF288092.1 Naegleria gruberi mitochondrial DNA, complete genome.    38   0.047  4
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36   0.060  7
AC021839|AC021839.3 Homo sapiens chromosome 14 clone RP11-46A6 map 14, WORKING DRAFT SEQUENCE, 19 unordered pieces.    40   0.075  4
AC112790|AC112790.4 Mus musculus chromosome 10 clone RP23-160A1, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48   0.090  1
AX458543|AX458543.1 Sequence 89 from Patent WO0246454.             46   0.097  3
BX855590|BX855590.3 Zebrafish DNA sequence from clone CH211-245N8.    36   0.10   4
AC136915|AC136915.14 Mus musculus chromosome 16, clone RP23-65O24, complete sequence.    38   0.23   2
AC133935|AC133935.2 Mus musculus chromosome 3 clone RP24-387M21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38   0.30   2
dna update 2004. 9.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134_2900(AE014134|pid:none) Drosophila melanogaster chromos...    74   2e-12
BC068899_1(BC068899|pid:none) Xenopus laevis hypothetical protei...    69   6e-11
FB789847_1(FB789847|pid:none) Sequence 9120 from Patent WO200803...    68   8e-11
AL833411_1(AL833411|pid:none) Homo sapiens mRNA; cDNA DKFZp313D1...    67   1e-10
AK304367_1(AK304367|pid:none) Homo sapiens cDNA FLJ58474 complet...    67   1e-10
AL354951_7(AL354951|pid:none) Human DNA sequence from clone RP11...    67   1e-10
AL354951_5(AL354951|pid:none) Human DNA sequence from clone RP11...    67   1e-10
(Q9NQW7) RecName: Full=Xaa-Pro aminopeptidase 1;          EC=3.4...    67   1e-10
BC161781_1(BC161781|pid:none) Xenopus tropicalis hypothetical pr...    67   1e-10
(Q6P1B1) RecName: Full=Xaa-Pro aminopeptidase 1;          EC=3.4...    66   3e-10
protein update 2009. 4.23
PSORT 

 psg: 0.71  gvh: 0.45  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFJ209 is cyt
5' end seq. ID AFJ209F
5' end seq. 
>AFJ209F.Seq
ATCAAAGNGAATATATTTGNGTTAAAGATAAAAGAAAAGANTNTNTTAGNGGATTCAGNG
GTAGNGCTGGTTGNGTTGTAATCNCATTAGATAATCAATTNTTATGGNCTGATGGTCGTT
NTTGGTTNCAAGCTGAAAAAGAATTANAATCAAATTGGAAAATAATGAAAGATCGNGTTG
TTGGNGANCCANCAATTCAAGATNGGTTNTTATCTAATTTAAATAAAGAAAATAAAGTTG
GTATTGATAGTAGATTAATTTCAAAAGGTTNTTATGATAGTATGAAATTAGTNTTAAAAG
ANAAATCAATNGATNTTAAATTTGATGA----------
Length of 5' end seq. 328
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -