SHD834
Library SH
(Link to library)
Clone ID SHD834
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHD834 (SHD834Q) /CSM/SH/SHD8-B/SHD834Q.Seq.d/
TTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAG
TTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGA
AAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTG
TTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCC
TTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAG
GTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAG
GACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAA
TTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAG
ACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAAT
ATGGTTGTAAAATGGTAAGCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
il*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDVV
RMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLLG
PIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQY
GCKMV---


Translated Amino Acid sequence (All Frames)
Frame A:
lfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvml
lecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvly*
dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvyn
mvvkw*---


Frame B:
yfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*cc
*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfir
tnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmfti
wl*ngk---


Frame C:
il*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDVV
RMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLLG
PIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQY
GCKMV---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1110 0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 1110 0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 1110 0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 1110 0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 1110 0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/ 1110 0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/ 1110 0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/ 1110 0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/ 1110 0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/ 1110 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces. 40 0.006 4
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275. 38 0.088 2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273. 38 0.088 2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003. 38 0.088 2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276. 38 0.088 2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274. 38 0.088 2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277. 38 0.088 2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272. 38 0.088 2
CQ332228|CQ332228.1 Sequence 6322 from Patent WO0157275. 38 0.26 2
CQ174467|CQ174467.1 Sequence 5863 from Patent WO0157274. 38 0.26 2
dna update 2006. 2. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 204 2e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 109 4e-23
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 80 5e-14
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 78 2e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 77 3e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 76 5e-13
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 76 5e-13
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 76 5e-13
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 76 5e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 76 7e-13
protein update 2009. 4.16
PSORT

psg: 0.67 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: vesicles of secretory system

>> prediction for SHD834 is cyt

5' end seq. ID SHD834F
5' end seq.
>SHD834F.Seq
TTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAG
TTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGA
AAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTG
TTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCC
TTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAG
GTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAG
GACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAA
TTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAG
ACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAAT
ATGGTTGTAAAATGGTAAGCNNNNNNNNNN
Length of 5' end seq. 570
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -