SHD815
Library SH
(Link to library)
Clone ID SHD815
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11129-1
Original site URL
Representative seq. ID SHD815P
(Link to Original site)
Representative DNA sequence
>SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/
AGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGTGATAGA
TCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGTTATAAA
ACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGTAAATGT
CCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAAGACCAA
TTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCATCAGAG
GTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCCGATAAC
TTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGATAAGGTA
TCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCAGGTAGA
TGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGTAAAGGT
TGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGGGCTGTT
CAATTTCCTGATGATCTTTCAAAAAATAAATTCCTTTCXXXXXXXXXXCTTAAGAAGCAA
ACTGAATCCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACT
CACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATA
GTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAG
AGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGC
ATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCAC
CATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTA
GTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTAT
GTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCAC
CACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATC
ATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTC
TCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCAGAATCA
AATACATCTTAAGAGTTTACAATGGAAAATAAAATAAAATAAAATTTTTTAAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence
RKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKCKC
PQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSIADN
LKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQCKG
WISGFTKCDWKGDSIERWAVQFPDDLSKNKFL---

---LRSKLNPLEGNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti*nqylcsr
ysft*ere*k*tfhslgkr*e*itlmaw**vn*fridclagikncsticsknwlqiw*ry
lfc*ly**iiqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*yksfrygc
ssqrw*sssf*f*wfsstir*nfkdwslnfmysq*ihcl*n*tsqnqihlkslqwkik*n
kif*n


Translated Amino Acid sequence (All Frames)
Frame A:
RKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKCKC
PQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSIADN
LKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQCKG
WISGFTKCDWKGDSIERWAVQFPDDLSKNKFL---

---lkkqtestrg*hd*ksiyytqnqthshlikiv*fikpw*imlpivkinnlepisvfk
iffhlrermkvnvsllgqkiridysygmvvg*lisyrlsrrd*ellhhllqklvtdlvkv
fillivlvnhsaivshqvivqlhlcyyvkfhlvt*mn*nmipiwkrhhihsivqkl*vwl
lltkmviilflilmv**yh*vkfqrlvsqlhvltmnslsiklnksesnts*eftmenkik
*nflkl

Frame B:
ekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgii*nvnv
hkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*rhygklkivlpit
*rdqqlktsfniikvmliryhqfiyfilsligc*kvvqvdvqlvrisiyfsmvsninvkv
gfqvsqnvigkviqlkdglfnflmifqkinsf---

---LRSKLNPLEGNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti*nqylcsr
ysft*ere*k*tfhslgkr*e*itlmaw**vn*fridclagikncsticsknwlqiw*ry
lfc*ly**iiqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*yksfrygc
ssqrw*sssf*f*wfsstir*nfkdwslnfmysq*ihcl*n*tsqnqihlkslqwkik*n
kif*n

Frame C:
kngnkkyisl*d*icke**inmfnlskry**rsssywl*nkiktl*wngcimasfkm*ms
tstiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkgimgs*r*ycr*l
egtsn*khhsi**rlc**gitssftsysl*ldvkrssr*msnl*efrytfqwyrism*rl
dfrfhkm*ler*fn*kmgcsis**sfkk*ipf---

---*ean*ihsrvt*lkinilhskpnslpldkdsvvyktlvdyvansqdkqfrtnicvqd
ilslereneserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgi
yfadcisksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaa
phkdgnhplsdsdglvvplgkisktglstscthnefivykieqvrikyilrvyngk*nki
kffki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/ 2605 0.0
CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/ 1376 0.0
VHB303 (VHB303Q) /CSM/VH/VHB3-A/VHB303Q.Seq.d/ 1360 0.0
SHJ664 (SHJ664Q) /CSM/SH/SHJ6-C/SHJ664Q.Seq.d/ 1360 0.0
CHI483 (CHI483Q) /CSM/CH/CHI4-D/CHI483Q.Seq.d/ 1360 0.0
AHM188 (AHM188Q) /CSM/AH/AHM1-D/AHM188Q.Seq.d/ 1360 0.0
AHB712 (AHB712Q) /CSM/AH/AHB7-A/AHB712Q.Seq.d/ 1360 0.0
AHR444 (AHR444Q) /CSM/AH/AHR4-B/AHR444Q.Seq.d/ 1354 0.0
VHA783 (VHA783Q) /CSM/VH/VHA7-D/VHA783Q.Seq.d/ 1346 0.0
VHB869 (VHB869Q) /CSM/VH/VHB8-C/VHB869Q.Seq.d/ 1344 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1265 0.0 1
AJ520099|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 62 3e-14 3
CR356247|CR356247.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 0.50 9
AC127465|AC127465.3 Didelphis virginiana clone LB3-97M17, complete sequence. 38 0.50 4
CL958527|CL958527.1 OsIFCC001618 Oryza sativa Express Library Oryza sativa (indica cultivar-group) genomic, genomic survey sequence. 48 0.52 1
AC132117|AC132117.3 Mus musculus BAC clone RP24-162P19 from 6, complete sequence. 38 0.53 4
AE008540|AE008540.1 Streptococcus pneumoniae R6 section 156 of 184 of the complete genome. 42 0.79 3
BX936323|BX936323.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-213J22. 36 1.0 2
AC021731|AC021731.3 Homo sapiens chromosome 11 clone RP11-693K15 map 11, WORKING DRAFT SEQUENCE, 13 unordered pieces. 36 1.0 2
AC010943|AC010943.3 Homo sapiens clone RP11-115E19, WORKING DRAFT SEQUENCE, 9 unordered pieces. 36 1.0 2
dna update 2006. 2. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 186 2e-45
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 186 2e-45
PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 185 3e-45
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 185 3e-45
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet... 184 6e-45
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 184 8e-45
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl... 183 1e-44
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA... 183 1e-44
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF... 183 1e-44
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym... 183 1e-44
protein update 2009. 4.16
PSORT

psg: 0.58 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
24.0 %: cytoplasmic
24.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for SHD815 is nuc

5' end seq. ID SHD815F
5' end seq.
>SHD815F.Seq
AGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGTGATAGA
TCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGTTATAAA
ACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGTAAATGT
CCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAAGACCAA
TTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCATCAGAG
GTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCCGATAAC
TTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGATAAGGTA
TCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCAGGTAGA
TGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGTAAAGGT
TGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGGGCTGTT
CAATTTCCTGATGATCTTTCAAAAAATAAATTCCTTTCNNNNNNNNNN
Length of 5' end seq. 648
3' end seq. ID SHD815Z
3' end seq.
>SHD815Z.Seq
NNNNNNNNNNCTTAAGAAGCAAACTGAATCCACTCGAGGGTAACATGATTGAAAATCAAT
ATATTACACTCAAAACCAAACTCACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACC
TTGGTAGATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAA
GATATTCTTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGAT
AAGAATAGATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCG
CAGGGATTAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGT
ATTTATTTTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGT
CCAACTGCACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACAT
GATACCTATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCT
GCTCCTCACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTA
GGTAAAATTTCAAAGACTGGTCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTAT
AAAATTGAACAAGTCAGAATCAAATACATCTTAAGAGTTTACAATGGAAAATAAAATAAA
ATAAAATTTTTTAAAATTA
Length of 3' end seq. 739
Connected seq. ID SHD815P
Connected seq.
>SHD815P.Seq
AGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGTGATAGA
TCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGTTATAAA
ACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGTAAATGT
CCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAAGACCAA
TTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCATCAGAG
GTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCCGATAAC
TTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGATAAGGTA
TCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCAGGTAGA
TGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGTAAAGGT
TGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGGGCTGTT
CAATTTCCTGATGATCTTTCAAAAAATAAATTCCTTTC----------CTTAAGAAGCAA
ACTGAATCCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACT
CACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATA
GTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAG
AGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGC
ATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCAC
CATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTA
GTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTAT
GTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCAC
CACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATC
ATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTC
TCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCAGAATCA
AATACATCTTAAGAGTTTACAATGGAAAATAAAATAAAATAAAATTTTTTAAAATTA
Length of connected seq. 1367
Full length Seq ID -
Full length Seq. -
Length of full length seq. -