SHD731 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHD731
Library	SH (Link to library)
Clone ID	SHD731 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11097-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHD7-B/SHD731Q.Seq.d/
Representative seq. ID	SHD731P (Link to Original site)
Representative DNA sequence	>SHD731 (SHD731Q) /CSM/SH/SHD7-B/SHD731Q.Seq.d/ CATGATGCATTACCAGGTTCATCAATTCAAGTTTGCTATGAAGATATCTTAAAAATTCAT CAACAAGTTTTAGTTGAATGTAAAAATATTATCACACAATCTATGAATCATATAACTGGT ACTCTATTGAAAATCGATAATTTACCAACTACTTCCACTACCACCAGCACCACCACCACC TCTACTACTGAATGTACAAAAAATTCTGAATTTGTATTAGCATTCAATGCAAATGATTTT GAAATTAGTAGAGTAATTGAAATTCCAAAATCAAATAAAGATATTCAAGCTCAATATATC AATGCAATTCAAACATCTTATAATGGTTTACCATTGGGTACTGTAAGTTTACCACCAAAT GGTTTCTCTGCAATTAATATCTCAACAAGTGGTGATAATAGAACTATCAATAGAAAACCA GGTTATCCTTGTACTGCAATTGAAAAGAATGATGCTAGTGGTGATATTTTAATTGATAAT CAATTCATTTCAATTGTTATTGGTTCCAATGGTAGAATTAAAAGTTTAATTGAAAAATCA GCAAATAGAGAAGTGATTAAACAAGATGGTTCATTGGGTAATAGATTAATAATTTTCGAT GATACTTGTCTATTTTGGGATGCTTGGGATXXXXXXXXXXTTCGATACCAATATTAGAGC AAAGAATGCAAATTATGAAATTCAATTTGGTCATATCGAACGTCCAAACTCATTATAACA CAAGTTGGGATTTCGCAAGATTTGAAGTTGTCGGACATAAATGGGCCGATCTTAGTGAAT ATGATTTTGGTATGGCATTATTGAACGATTGTAAATATGGTTACTCAACATTAGGTGGTC GTATTGGTTTATCATTACTAAGATCACCAAAATCACCCGATGATACTTGTGATATGGGTT CTCATAAATTCACCTACTCAATTTATCCACATCGTGGTTCACTTCAATCTGCCTCCGTCA TTAAAGAAGGCTATTCATTAAATAATAACTTTTATATCAGTGAAACACCATTCTCTTTAG CTTCTACAACTCATATCGATAAAACTTTTATCTCAACAAATAAAGAAGCCATCATTGTTG ATACAATTAAAAAAGCTGAAGATGGCACCTCTTTTGTTGTGCGTGTTTATGAATCTTTTG GTGGTGCCACTACTTTTAACTTTACATCTTCAATCCTTCCAATTCCATTCAAATCAATCA TTGAATGTAATGGTCTTGAAGAAGTTAATCAATCTTCAAAATCTTATAAATTTAATGATA CAATTAAAATTAATCCATTTGAAATCAAAACTTTTAGATTTATTTCAAATTAAAAATTAA AAATAAAATTAATAAATAAATATAAAAATAAATTTTAACA
sequence update	2002.10.25
Translated Amino Acid sequence	HDALPGSSIQVCYEDILKIHQQVLVECKNIITQSMNHITGTLLKIDNLPTTSTTTSTTTT STTECTKNSEFVLAFNANDFEISRVIEIPKSNKDIQAQYINAIQTSYNGLPLGTVSLPPN GFSAINISTSGDNRTINRKPGYPCTAIEKNDASGDILIDNQFISIVIGSNGRIKSLIEKS ANREVIKQDGSLGNRLIIFDDTCLFWDAWD--- ---SIPILEQRMQIMKFNLVISNVQTHYNTSWDFARFEVVGHKWADLSEYDFGMALLNDC KYGYSTLGGRIGLSLLRSPKSPDDTCDMGSHKFTYSIYPHRGSLQSASVIKEGYSLNNNF YISETPFSLASTTHIDKTFISTNKEAIIVDTIKKAEDGTSFVVRVYESFGGATTFNFTSS ILPIPFKSIIECNGLEEVNQSSKSYKFNDTIKINPFEIKTFRFISNklkiklinkyknk f
Translated Amino Acid sequence (All Frames)	Frame A: HDALPGSSIQVCYEDILKIHQQVLVECKNIITQSMNHITGTLLKIDNLPTTSTTTSTTTT STTECTKNSEFVLAFNANDFEISRVIEIPKSNKDIQAQYINAIQTSYNGLPLGTVSLPPN GFSAINISTSGDNRTINRKPGYPCTAIEKNDASGDILIDNQFISIVIGSNGRIKSLIEKS ANREVIKQDGSLGNRLIIFDDTCLFWDAWD--- ---fdtniraknanyeiqfghierpnslhklgfrkiscrtmgrsifwygiierl iwllnirwsywfiitkitkitrylygfsihllnlstswftsiclrhrrlfikl lyqntilfsfynsyrnfylnkrshhcynksrwhlfccaclifwwchyflyif npsnsiqinhmwsrssifkili*ynnsinqnfiyfklkiknkinkik ilt Frame B: mmhyqvhqfkfamkiskfinkflnvkilshnliilvlyksiiyqllplppapppp lllnvqkilnlyhsmqmilklvelkfqnqikifklnismqfkhlimvyhwvlvyhqm vslqlisqqvviielsienqvilvlqlkrmmlvvifliinsfqlllvpmvelkvlknq qieklnkmvhwvidfsmilvyfgmlg--- ---SIPILEQRMQIMKFNLVISNVQTHYNTSWDFARFEVVGHKWADLSEYDFGMALLNDC KYGYSTLGGRIGLSLLRSPKSPDDTCDMGSHKFTYSIYPHRGSLQSASVIKEGYSLNNNF YISETPFSLASTTHIDKTFISTNKEAIIVDTIKKAEDGTSFVVRVYESFGGATTFNFTSS ILPIPFKSIIECNGLEEVNQSSKSYKFNDTIKINPFEIKTFRFISNklkiklinkyknk f* Frame C: citrfinssllrylknsstsfsmkyyhtiyesynwysienrftnyfhyhqhhhhl yymykkficisiqckfnsnnskikrysssiyqcnsnilwftigyckfttkw flcnylnkw*nyqktrlslycnkecwyfn*sihfncywfqwnkfnkis krsdtrwfig*innfrylsilgclg--- ---ryqyskecklnsiwsyrtskliitqvgisqdlklsdingpilvnmilvwhytiv nmvtqhvvvlvyhydhqnhpmilviwvlinsptqfihivvhfnlppslkkaihiitf isvkhhslllqlisikllsqqikkpslliqlkklkmaplllcvfmnllvvpllltlhlq sfqfhsnqslnvmvlkklinlqnlinlmiqlklihlksklldlfqiknkn*inikin fn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHD731 (SHD731Q) /CSM/SH/SHD7-B/SHD731Q.Seq.d/ 2529 0.0 AHO450 (AHO450Q) /CSM/AH/AHO4-C/AHO450Q.Seq.d/ 1312 0.0 SHF873 (SHF873Q) /CSM/SH/SHF8-D/SHF873Q.Seq.d/ 1304 0.0 SHF554 (SHF554Q) /CSM/SH/SHF5-C/SHF554Q.Seq.d/ 1304 0.0 SHA333 (SHA333Q) /CSM/SH/SHA3-B/SHA333Q.Seq.d/ 1304 0.0 CHQ611 (CHQ611Q) /CSM/CH/CHQ6-A/CHQ611Q.Seq.d/ 1304 0.0 AHR366 (AHR366Q) /CSM/AH/AHR3-C/AHR366Q.Seq.d/ 1304 0.0 AHN834 (AHN834Q) /CSM/AH/AHN8-B/AHN834Q.Seq.d/ 1304 0.0 AHL346 (AHL346Q) /CSM/AH/AHL3-B/AHL346Q.Seq.d/ 1304 0.0 AFM177 (AFM177Q) /CSM/AF/AFM1-D/AFM177Q.Seq.d/ 1304 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC177777\|AC177777.1 Strongylocentrotus purpuratus clone R3-1002L11, WORKING DRAFT SEQUENCE, 20 unordered pieces. 62 3e-05 1 AC129602\|AC129602.3 Mus musculus chromosome 16 clone RP23-37L24, complete sequence. 60 1e-04 1 AC116106\|AC116106.18 Mus musculus chromosome 16, clone RP23-23D5, complete sequence. 60 1e-04 1 AC146997\|AC146997.2 Arbacia punctulata clone BAP-144G2, WORKING DRAFT SEQUENCE, 13 unordered pieces. 58 5e-04 1 BA000016\|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 56 0.002 1 AC168762\|AC168762.2 Strongylocentrotus purpuratus clone R3-3004F4, WORKING DRAFT SEQUENCE, 17 unordered pieces. 54 0.002 7 AC113811\|AC113811.6 Rattus norvegicus clone CH230-216D16, * SEQUENCING IN PROGRESS , 4 unordered pieces. 54 0.008 1 AC106669\|AC106669.5 Rattus norvegicus clone CH230-99L19, WORKING DRAFT SEQUENCE, 1 ordered piece. 54 0.008 1 AC098951\|AC098951.5 Rattus norvegicus clone CH230-173E15, WORKING DRAFT SEQUENCE, 5 unordered pieces. 54 0.008 1 AC096066\|AC096066.6 Rattus norvegicus clone CH230-20D23, SEQUENCING IN PROGRESS *, 4 unordered pieces. 54 0.008 1
dna update	2006. 2. 6
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54K67) RecName: Full=Alpha-mannosidase G; EC=3.2.1.24; 391 e-113 AE017262_2020(AE017262\|pid:none) Listeria monocytogenes str. 4b ... 151 4e-35 (Q9NTJ4) RecName: Full=Alpha-mannosidase 2C1; EC=3.2.1.... 139 6e-35 AG1326(AG1326) alpha-mannosidase homolog lmo2015 [imported] - Li... 149 2e-34 AF044414_1(AF044414\|pid:none) Homo sapiens alpha mannosidase 6A8... 137 2e-34 U37248_1(U37248\|pid:none) Homo sapiens alpha-mannosidase (6A8) m... 137 2e-34 AM263198_2035(AM263198\|pid:none) Listeria welshimeri serovar 6b ... 147 6e-34 AK049370_1(AK049370\|pid:none) Mus musculus ES cells cDNA, RIKEN ... 134 2e-33 (Q91W89) RecName: Full=Alpha-mannosidase 2C1; EC=3.2.1.... 134 2e-33 CP000312_2007(CP000312\|pid:none) Clostridium perfringens SM101, ... 138 3e-33
protein update	2009. 4.16
PSORT	psg: 0.75 gvh: 0.39 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 36.0 %: cytoplasmic 8.0 %: cytoskeletal 8.0 %: vacuolar 8.0 %: mitochondrial >> prediction for SHD731 is nuc
5' end seq. ID	SHD731F
5' end seq.	>SHD731F.Seq CATGATGCATTACCAGGTTCATCAATTCAAGTTTGCTATGAAGATATCTTAAAAATTCAT CAACAAGTTTTAGTTGAATGTAAAAATATTATCACACAATCTATGAATCATATAACTGGT ACTCTATTGAAAATCGATAATTTACCAACTACTTCCACTACCACCAGCACCACCACCACC TCTACTACTGAATGTACAAAAAATTCTGAATTTGTATTAGCATTCAATGCAAATGATTTT GAAATTAGTAGAGTAATTGAAATTCCAAAATCAAATAAAGATATTCAAGCTCAATATATC AATGCAATTCAAACATCTTATAATGGTTTACCATTGGGTACTGTAAGTTTACCACCAAAT GGTTTCTCTGCAATTAATATCTCAACAAGTGGTGATAATAGAACTATCAATAGAAAACCA GGTTATCCTTGTACTGCAATTGAAAAGAATGATGCTAGTGGTGATATTTTAATTGATAAT CAATTCATTTCAATTGTTATTGGTTCCAATGGTAGAATTAAAAGTTTAATTGAAAAATCA GCAAATAGAGAAGTGATTAAACAAGATGGTTCATTGGGTAATAGATTAATAATTTTCGAT GATACTTGTCTATTTTGGGATGCTTGGGATNNNNNNNNNN
Length of 5' end seq.	640
3' end seq. ID	SHD731Z
3' end seq.	>SHD731Z.Seq NNNNNNNNNNTTCGATACCAATATTAGAGCAAAGAATGCAAATTATGAAATTCAATTTGG TCATATCGAACGTCCAAACTCATTATAACACAAGTTGGGATTTCGCAAGATTTGAAGTTG TCGGACATAAATGGGCCGATCTTAGTGAATATGATTTTGGTATGGCATTATTGAACGATT GTAAATATGGTTACTCAACATTAGGTGGTCGTATTGGTTTATCATTACTAAGATCACCAA AATCACCCGATGATACTTGTGATATGGGTTCTCATAAATTCACCTACTCAATTTATCCAC ATCGTGGTTCACTTCAATCTGCCTCCGTCATTAAAGAAGGCTATTCATTAAATAATAACT TTTATATCAGTGAAACACCATTCTCTTTAGCTTCTACAACTCATATCGATAAAACTTTTA TCTCAACAAATAAAGAAGCCATCATTGTTGATACAATTAAAAAAGCTGAAGATGGCACCT CTTTTGTTGTGCGTGTTTATGAATCTTTTGGTGGTGCCACTACTTTTAACTTTACATCTT CAATCCTTCCAATTCCATTCAAATCAATCATTGAATGTAATGGTCTTGAAGAAGTTAATC AATCTTCAAAATCTTATAAATTTAATGATACAATTAAAATTAATCCATTTGAAATCAAAA CTTTTAGATTTATTTCAAATTAAAAATTAAAAATAAAATTAATAAATAAATATAAAAATA AATTTTAACA
Length of 3' end seq.	730
Connected seq. ID	SHD731P
Connected seq.	>SHD731P.Seq CATGATGCATTACCAGGTTCATCAATTCAAGTTTGCTATGAAGATATCTTAAAAATTCAT CAACAAGTTTTAGTTGAATGTAAAAATATTATCACACAATCTATGAATCATATAACTGGT ACTCTATTGAAAATCGATAATTTACCAACTACTTCCACTACCACCAGCACCACCACCACC TCTACTACTGAATGTACAAAAAATTCTGAATTTGTATTAGCATTCAATGCAAATGATTTT GAAATTAGTAGAGTAATTGAAATTCCAAAATCAAATAAAGATATTCAAGCTCAATATATC AATGCAATTCAAACATCTTATAATGGTTTACCATTGGGTACTGTAAGTTTACCACCAAAT GGTTTCTCTGCAATTAATATCTCAACAAGTGGTGATAATAGAACTATCAATAGAAAACCA GGTTATCCTTGTACTGCAATTGAAAAGAATGATGCTAGTGGTGATATTTTAATTGATAAT CAATTCATTTCAATTGTTATTGGTTCCAATGGTAGAATTAAAAGTTTAATTGAAAAATCA GCAAATAGAGAAGTGATTAAACAAGATGGTTCATTGGGTAATAGATTAATAATTTTCGAT GATACTTGTCTATTTTGGGATGCTTGGGAT----------TTCGATACCAATATTAGAGC AAAGAATGCAAATTATGAAATTCAATTTGGTCATATCGAACGTCCAAACTCATTATAACA CAAGTTGGGATTTCGCAAGATTTGAAGTTGTCGGACATAAATGGGCCGATCTTAGTGAAT ATGATTTTGGTATGGCATTATTGAACGATTGTAAATATGGTTACTCAACATTAGGTGGTC GTATTGGTTTATCATTACTAAGATCACCAAAATCACCCGATGATACTTGTGATATGGGTT CTCATAAATTCACCTACTCAATTTATCCACATCGTGGTTCACTTCAATCTGCCTCCGTCA TTAAAGAAGGCTATTCATTAAATAATAACTTTTATATCAGTGAAACACCATTCTCTTTAG CTTCTACAACTCATATCGATAAAACTTTTATCTCAACAAATAAAGAAGCCATCATTGTTG ATACAATTAAAAAAGCTGAAGATGGCACCTCTTTTGTTGTGCGTGTTTATGAATCTTTTG GTGGTGCCACTACTTTTAACTTTACATCTTCAATCCTTCCAATTCCATTCAAATCAATCA TTGAATGTAATGGTCTTGAAGAAGTTAATCAATCTTCAAAATCTTATAAATTTAATGATA CAATTAAAATTAATCCATTTGAAATCAAAACTTTTAGATTTATTTCAAATTAAAAATTAA AAATAAAATTAATAAATAAATATAAAAATAAATTTTAACA
Length of connected seq.	1350
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas