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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD730
Library SH
(Link to library)
Clone ID SHD730
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHD730P
(Link to Original site)
Representative DNA sequence 
>SHD730 (SHD730Q) /CSM/SH/SHD7-B/SHD730Q.Seq.d/
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTXXXXXXXXXXTTTAACCTGTAATGTAACCAACTATGA
TGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGG
TCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGA
AAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATT
TTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAG
AGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGC
TGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAG
TTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAA
AGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATT
AAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTT
TTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAA
TATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTT
TTAAATTNT
sequence update 2002.10.25
Translated Amino Acid sequence 
*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILLN
PNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTY
NYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGD
IPNKPTIDDQGNITIQGSNLYNTQIKI---

---LTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQFKYESTISYSENKSSGFPN
EMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDNLRLKLREKHAAEIAKHYS
FGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpnsnpiisnsklnlnqihqs
iik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannysiif*i
Translated Amino Acid sequence (All Frames) 
Frame A:
idpqlviske*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmiklfpff*
iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*edplish
itilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fimlhikle
iyqinqqsmtkeilpfkevtfttpklk---

---fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi*i*inn*l**k*virisk
*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etcc*nr*tlf
iwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnniqf*ikpkpnspi
ynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*llnyflnx

Frame B:
ltrn**lvkneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssyfhsfk
sk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fhi
*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*cfisnwr
ytk*tnnr*prkyyhsrk*plqhpn*n---

---LTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQFKYESTISYSENKSSGFPN
EMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDNLRLKLREKHAAEIAKHYS
FGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpnsnpiisnsklnlnqihqs
iik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannysiif*i

Frame C:
*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILLN
PNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTY
NYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGD
IPNKPTIDDQGNITIQGSNLYNTQIKI---

---*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsnlnmnqqlvivkishqdfqm
kcisvllql*yf*h*fslllkhrlknilkreepekhldqliiyvlnfvrnmllkslniih
lvmkalqnqikvismi*ernyldshsldvvsknilikyyfqiqiq*ypiln*t*tkftnl
*snnqfiscncfcsciisssisiynfflllliylkqink*ikkkqiitqlffkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/                       1213   0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/                       1213   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1213   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1213   0.0
SHK774 (SHK774Q) /CSM/SH/SHK7-D/SHK774Q.Seq.d/                       1213   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1213   0.0
SHK629 (SHK629Q) /CSM/SH/SHK6-B/SHK629Q.Seq.d/                       1213   0.0
SHK166 (SHK166Q) /CSM/SH/SHK1-C/SHK166Q.Seq.d/                       1213   0.0
SHJ869 (SHJ869Q) /CSM/SH/SHJ8-C/SHJ869Q.Seq.d/                       1213   0.0
SHJ822 (SHJ822Q) /CSM/SH/SHJ8-A/SHJ822Q.Seq.d/                       1213   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   200   4e-83  13
DD010735|DD010735.1 Diagnosis of known genetic Parameters within the MHC.    36   0.012  15
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    34   0.061  13
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.093  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.094  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.094  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.094  2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.094  2
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             34   0.28   17
AC093411|AC093411.2 Homo sapiens chromosome 3 clone RP11-1C5, complete sequence.    38   0.47   7
dna update 2006. 2. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   379   e-103
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   379   e-103
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   379   e-103
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   379   e-103
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   238   1e-63
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   238   1e-63
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   238   2e-63
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   238   2e-63
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   236   5e-63
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   235   6e-63
protein update 2009. 4.16
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.08  top: 0.23  tms: 0.13  mit: 0.40  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SHD730 is end
5' end seq. ID SHD730F
5' end seq. 
>SHD730F.Seq
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTNNNNNNNNNN
Length of 5' end seq. 633
3' end seq. ID SHD730Z
3' end seq. 
>SHD730Z.Seq
NNNNNNNNNNTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACT
CCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTT
TCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAA
ATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTA
TTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAG
TTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATT
CATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGA
AATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTAT
TTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAAT
CTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCT
TCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAA
TAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTNT
Length of 3' end seq. 706
Connected seq. ID SHD730P
Connected seq. 
>SHD730P.Seq
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATT----------TTTAACCTGTAATGTAACCAACTATGA
TGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGG
TCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGA
AAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATT
TTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAG
AGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGC
TGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAG
TTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAA
AGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATT
AAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTT
TTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAA
TATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTT
TTAAATTNT
Length of connected seq. 1319
Full length Seq ID -
Full length Seq. -
Length of full length seq. -