SHD704
Library SH
(Link to library)
Clone ID SHD704
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID SHD704P
(Link to Original site)
Representative DNA sequence
>SHD704 (SHD704Q) /CSM/SH/SHD7-A/SHD704Q.Seq.d/
ATTTAATTTTATAAATAATTAAACAACAACAACAACAACAACAACAACAAAAACAACAAC
AACAGTTTTTACTTTATATTTTTTATTGTTGTAATAAGAAAATAAAACTATAAATTAAAT
ATATTTGTAATACCATATCCATATAAAATTAATAATATTTAGGTTTAATATCCTTTTTTT
ATTTAAATATAATAATAATAATAATACAAATATATATAAATTCAATTTCTTGTCATAAAA
AATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAATATAAATAG
TAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGGTAGAGATAT
TGGTAATAATCAAAGTAGTAGAAATTTAAAACCAAAACCATCACAAAGCAATTTGAAATG
GATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAAGTTAAAGAG
TAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGGCTTTGGTGAAGATGATGGTGGTAG
TGGTGACGATAGTAATATAACCXXXXXXXXXXTTCTCCATTAATTATGAGTATTTGGACT
GTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATG
GTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGT
AAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTC
TTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAA
CTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGAT
TTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAAT
GATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAAC
AAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTT
GTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATG
TGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTC
ATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCT
CACAATATTGTTTTATTCTTGGTACTTGGTTTCTGGTATTACTCTTTGTGATGTCAAAGT
TTGATTCCTAGA
sequence update 2002.10.25
Translated Amino Acid sequence
fnfinn*tttttttttkttttvftlyflll**enktin*iyl*yhihikliifrfnilfl
fkynnnnntniykfnfls*KIMDRNEGGDFPINTPNNINSSGGSYNNSMNNSSNNIGRDI
GNNQSSRNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMGFGEDDGGS
GDDSNIT---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLV
LGFWYYSL*cqslipr


Translated Amino Acid sequence (All Frames)
Frame A:
i*fyk*lnnnnnnnnnknnnnsfyfiffivvirk*nyklnifvipypykinni*v*ypff
i*i*****ykyi*iqflviknng*k*rg*fpnkhp**yk**wg*l***ye*****yw*ry
w**sk**kfktktitkqfemdskrfkkeic*krfrekvke*wcfkekeycdglw*r*ww*
w*r**yn---

---fsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlg
rsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl
*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyde
cct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfilg
twflvllfvmskfds*

Frame B:
fnfinn*tttttttttkttttvftlyflll**enktin*iyl*yhihikliifrfnilfl
fkynnnnntniykfnfls*KIMDRNEGGDFPINTPNNINSSGGSYNNSMNNSSNNIGRDI
GNNQSSRNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMGFGEDDGGS
GDDSNIT---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLV
LGFWYYSL*cqslipr

Frame C:
lil*iikqqqqqqqqqkqqqqfllyifyccnkkikl*ikyicntisi*n**ylglisffy
lniiiiiiqiyinsischkk*wiemkgvisq*tplii*ivvgvviiiv*iivviilveil
viikvvei*nqnhhkai*ng*qei*krnllekiqres*rvvvf*rkril*walvkmmvvv
vtivi*---

---lh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*
kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fv
kfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**v
lyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfyswy
lvsgitlcdvkv*fl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD704 (SHD704Q) /CSM/SH/SHD7-A/SHD704Q.Seq.d/ 1893 0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/ 1493 0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/ 1491 0.0
SHA836 (SHA836Q) /CSM/SH/SHA8-B/SHA836Q.Seq.d/ 1491 0.0
SHA730 (SHA730Q) /CSM/SH/SHA7-B/SHA730Q.Seq.d/ 1491 0.0
CHQ528 (CHQ528Q) /CSM/CH/CHQ5-B/CHQ528Q.Seq.d/ 1491 0.0
AHN472 (AHN472Q) /CSM/AH/AHN4-C/AHN472Q.Seq.d/ 1491 0.0
AHL670 (AHL670Q) /CSM/AH/AHL6-C/AHL670Q.Seq.d/ 1491 0.0
AHD708 (AHD708Q) /CSM/AH/AHD7-A/AHD708Q.Seq.d/ 1491 0.0
CHS394 (CHS394Q) /CSM/CH/CHS3-D/CHS394Q.Seq.d/ 1489 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 1431 0.0 3
AC004480|AC004480.7 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 7 unordered pieces. 54 0.008 1
AC093323|AC093323.3 Homo sapiens BAC clone RP11-539L10 from 4, complete sequence. 54 0.008 1
AC119408|AC119408.22 Medicago truncatula clone mth2-5f18, complete sequence. 48 0.29 2
BE941520|BE941520.1 EST421090 MGHG Medicago truncatula cDNA clone pMGHG-4A10, mRNA sequence. 48 0.49 1
AW776677|AW776677.1 EST335742 DSIL Medicago truncatula cDNA clone pDSIL-13D14, mRNA sequence. 48 0.49 1
AL386229|AL386229.1 Medicago truncatula EST MtBC33D01R1 : T7 end of clone MtBC33D01 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 48 0.49 1
AJ501113|AJ501113.1 Medicago truncatula EST, clone mtgmadc120002h11. 48 0.49 1
AL386228|AL386228.1 Medicago truncatula EST MtBC33D01F1 : T3 end of clone MtBC33D01 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 48 0.49 1
AC009594|AC009594.3 Homo sapiens chromosome 4 clone RP11-363G1 map 4, WORKING DRAFT SEQUENCE, 9 unordered pieces. 48 0.49 1
dna update 2006. 2. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 488 e-136
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl... 40 0.18
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/... 35 4.4
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 4.4
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 35 7.6

protein update 2009. 4.16
PSORT

psg: 0.75 gvh: 0.19 alm: 0.23 top: 0.73 tms: 0.20 mit: 0.27 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: plasma membrane
24.0 %: endoplasmic reticulum
16.0 %: vacuolar
12.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SHD704 is pla

5' end seq. ID SHD704F
5' end seq.
>SHD704F.Seq
ATTTAATTTTATAAATAATTAAACAACAACAACAACAACAACAACAACAAAAACAACAAC
AACAGTTTTTACTTTATATTTTTTATTGTTGTAATAAGAAAATAAAACTATAAATTAAAT
ATATTTGTAATACCATATCCATATAAAATTAATAATATTTAGGTTTAATATCCTTTTTTT
ATTTAAATATAATAATAATAATAATACAAATATATATAAATTCAATTTCTTGTCATAAAA
AATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAATATAAATAG
TAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGGTAGAGATAT
TGGTAATAATCAAAGTAGTAGAAATTTAAAACCAAAACCATCACAAAGCAATTTGAAATG
GATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAAGTTAAAGAG
TAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGGCTTTGGTGAAGATGATGGTGGTAG
TGGTGACGATAGTAATATAACCNNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID SHD704Z
3' end seq.
>SHD704Z.Seq
NNNNNNNNNNTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATC
CAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAAT
ATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGG
TAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATA
TTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTA
GTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTT
GTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTG
GTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAA
ATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGA
GTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTG
GTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAA
GTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGG
TACTTGGTTTCTGGTATTACTCTTTGTGATGTCAAAGTTTGATTCCTAGA
Length of 3' end seq. 770
Connected seq. ID SHD704P
Connected seq.
>SHD704P.Seq
ATTTAATTTTATAAATAATTAAACAACAACAACAACAACAACAACAACAAAAACAACAAC
AACAGTTTTTACTTTATATTTTTTATTGTTGTAATAAGAAAATAAAACTATAAATTAAAT
ATATTTGTAATACCATATCCATATAAAATTAATAATATTTAGGTTTAATATCCTTTTTTT
ATTTAAATATAATAATAATAATAATACAAATATATATAAATTCAATTTCTTGTCATAAAA
AATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAATATAAATAG
TAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGGTAGAGATAT
TGGTAATAATCAAAGTAGTAGAAATTTAAAACCAAAACCATCACAAAGCAATTTGAAATG
GATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAAGTTAAAGAG
TAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGGCTTTGGTGAAGATGATGGTGGTAG
TGGTGACGATAGTAATATAACC----------TTCTCCATTAATTATGAGTATTTGGACT
GTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATG
GTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGT
AAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTC
TTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAA
CTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGAT
TTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAAT
GATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAAC
AAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTT
GTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATG
TGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTC
ATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCT
CACAATATTGTTTTATTCTTGGTACTTGGTTTCTGGTATTACTCTTTGTGATGTCAAAGT
TTGATTCCTAGA
Length of connected seq. 1322
Full length Seq ID -
Full length Seq. -
Length of full length seq. -