SHD671
Library SH
(Link to library)
Clone ID SHD671
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID SHD671P
(Link to Original site)
Representative DNA sequence
>SHD671 (SHD671Q) /CSM/SH/SHD6-C/SHD671Q.Seq.d/
GATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGCAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAXXXXXXXXXXCAAGAATA
TCAAATACTTTAGAGAGAATAAAGAACAATTGAATAATATGTACCCTTCAGAGTTGGTGA
CAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTTTAG
ATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTCA
GATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAGA
TTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCTA
GTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAAT
ACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACATT
TAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATCA
ATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTATTCA
CTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAAG
ATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAGA
GAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATTA
AAAAGATTCAAAATTTCCAACAAGAATATGAATTATTTAAATATTCTTTNCNCGGGTTCA
AGA
sequence update 2002.10.25
Translated Amino Acid sequence
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVAEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFK---

---KNIKYFRENKEQLNNMYPSELVTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMG
YIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPETIQASTNLDSIIHNLSNNL
SEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYIDHMINSKDKLFKKSKAIGA
EALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCETDQKRMLAEANAKGIKEDQ
NHLAIKKIQNFQQEYELFKYSXXGFK


Translated Amino Acid sequence (All Frames)
Frame A:
dkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlqsnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslr---

---qeyqil*re*rtie*yvpfrvgdrvgkrh*tigclrdwfnlfrsf*tfnhsyw*cyg
ly*igqirwftll**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*f
irgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc
*sfiih**wlcnwfglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgs
ksfsn*kdskfptri*ii*iffxrvq

Frame B:
ikneqpnlenghilfg**wsk*riyi*ci*rwfi*igcratin*t*sics*lcttnledr
rsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkr
nsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicid
lsitkeytytil*---

---KNIKYFRENKEQLNNMYPSELVTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMG
YIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPETIQASTNLDSIIHNLSNNL
SEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYIDHMINSKDKLFKKSKAIGA
EALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCETDQKRMLAEANAKGIKEDQ
NHLAIKKIQNFQQEYELFKYSXXGFK

Frame C:
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVAEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFK---

---risntleriknn*iictlqsw*qswketldnwvsprlv*pf*iildf*slilvmlwv
ildwsdpvvytivvmlsnsyqt*krfqnski*pqkmpshlkqfklvpiwiqsfiifqiiy
qrvlntlrcw*tfslqsfeislini*risissylpwpqitsii*sivkinslrnqkqsvl
klyyslmmalqlvwlis*ny*ikikisilfigsivfn*nvklikrecwlkqmqkvskrik
ii*qlkrfkisnknmnylnilxxgsr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD671 (SHD671Q) /CSM/SH/SHD6-C/SHD671Q.Seq.d/ 2670 0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/ 1534 0.0
VHB619 (VHB619Q) /CSM/VH/VHB6-A/VHB619Q.Seq.d/ 1534 0.0
AHL641 (AHL641Q) /CSM/AH/AHL6-B/AHL641Q.Seq.d/ 1534 0.0
CHG465 (CHG465Q) /CSM/CH/CHG4-C/CHG465Q.Seq.d/ 1530 0.0
SHD893 (SHD893Q) /CSM/SH/SHD8-D/SHD893Q.Seq.d/ 1522 0.0
VHH719 (VHH719Q) /CSM/VH/VHH7-A/VHH719Q.Seq.d/ 1516 0.0
SHD280 (SHD280Q) /CSM/SH/SHD2-D/SHD280Q.Seq.d/ 1516 0.0
VHK424 (VHK424Q) /CSM/VH/VHK4-A/VHK424Q.Seq.d/ 1513 0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/ 1505 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescriptCanis familiaris cDNA clone CH3#002_C07 5', mRNA sequence. 38 7e-04 3
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 34 0.013 14
BY464171|BY464171.1 Mus musculus 15 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:K630150M24, 3' end partial sequence. 42 0.027 2
AK113047|AK113047.1 Ciona intestinalis cDNA, clone:ciad002a21, full insert sequence. 48 0.031 2
AC168241|AC168241.2 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces. 52 0.033 1
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome. 42 0.054 19
BB822673|BB822673.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830022O04, 3' end partial sequence. 32 0.11 4
DN287505|DN287505.1 1241755 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 34 0.12 3
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16. 50 0.13 1
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09. 50 0.13 1
dna update 2006. 2. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 520 e-146
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 258 4e-67
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 257 6e-67
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 257 6e-67
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 255 2e-66
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 255 2e-66
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN... 255 2e-66
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 255 2e-66
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 196 2e-48
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746... 191 5e-47
protein update 2009. 4.16
PSORT

psg: 0.79 gvh: 0.25 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHD671 is nuc

5' end seq. ID SHD671F
5' end seq.
>SHD671F.Seq
GATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGCAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGANNNNNNNNNN
Length of 5' end seq. 592
3' end seq. ID SHD671Z
3' end seq.
>SHD671Z.Seq
NNNNNNNNNNCAAGAATATCAAATACTTTAGAGAGAATAAAGAACAATTGAATAATATGT
ACCCTTCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGA
CTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGG
GTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCG
TACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCAC
CTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATT
TATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAA
ATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATT
ACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTG
CTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAAT
TATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAAT
GTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATC
AAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTATTTAAAT
ATTCTTTNCNCGGGTTCAAGA
Length of 3' end seq. 801
Connected seq. ID SHD671P
Connected seq.
>SHD671P.Seq
GATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGCAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGA----------CAAGAATA
TCAAATACTTTAGAGAGAATAAAGAACAATTGAATAATATGTACCCTTCAGAGTTGGTGA
CAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTTTAG
ATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTCA
GATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAGA
TTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCTA
GTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAAT
ACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACATT
TAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATCA
ATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTATTCA
CTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAAG
ATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAGA
GAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATTA
AAAAGATTCAAAATTTCCAACAAGAATATGAATTATTTAAATATTCTTTNCNCGGGTTCA
AGA
Length of connected seq. 1373
Full length Seq ID -
Full length Seq. -
Length of full length seq. -