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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD666
Library SH
(Link to library)
Clone ID SHD666
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11229-1
Original site URL
Representative seq. ID SHD666P
(Link to Original site)
Representative DNA sequence 
>SHD666 (SHD666Q) /CSM/SH/SHD6-C/SHD666Q.Seq.d/
ATATATTCAAATATTAAATTACCAGGTAATGTTATACCAATTCATTATTTTACACATGTC
GATATTAGAATGGAACCAAAATTTAATTTCAATGGTACAATTGTTTCAACATTGAATATT
ACAAGCGATAAAAATGATTTTATTGTGATTCATGCAGATGAAAGCACATTATCATTAAAT
AGTATTCACTTAGTATCAGTACCAAAATATAATAGTTCAAAACCGGTCAATAGTACCGAT
TTCGATTTGGAGTCATCTATCACTCCAACAAATAAAGTCTATAGTCCCGAAAATAGCTAT
TACATCTTATTTTTTAAGGATTTGAAAAAGTTTTTAGATAAAAATGGAAGTATTTTTAAT
TTATATATTAGTTATAATGGATCATTAGTTGATTCAGAAGGTACGAGTACATTAAGAGGA
TTATATTTATCATCATATAAGAATCCAAGTAATCATAGTGAATCAAAGTATTTAGCAGTA
ACACAATTTGAACCAGTTGATGCAAGATTATCATTTCCATGTTTTGATGAACCATCATTG
AAAGCCAATTGGACAATTTGGATTACACATCXXXXXXXXXXTTTCATTTGTTCACAATCG
TTTAGAAACCGTTGTTCCATGTTATATTCAATACATTAAAAAAGCTCAATACATTTTCAA
TAAAGGCTTATTACCACTCATCAAACTTAATATTACTTCGGATGATGAACTCTCCCTATA
ATCAATTGGAATTAAGAAAATCTGCCTTTTCAAAAGTAAACTCCTTATCAATTACTTCTT
TAAGAATTCATCTTAATCAAATTTATTTAGATAATATTGATACACCAGAAAATATTGATC
CATCAATTAGAGCTCCATTATTCTCATCAATTATACAAAATGGTGATATTGAAGAATATG
AATGGGTAGTTAATAGATTTGAAAATACAAATGCAATCAATGAAAGAATCGATGCTTTGA
AAGCAATTTCCAATCCAAAGAATCCACAATTAATTAGAAATACTTTAAAAATGCTTTTAG
ATGGTAAAATTAAAAGTCAAGACTTTTATATGGTTTTCTTGGAAATGTCATATTCACCAT
TTGCAAGAGAATTAGCTTGGAACTTTTTATTAGATAATTTTAATTTCATTTCAGAGAATT
CAACACCAGGTGATATTGGTAAATATGTAACCTATTTTGCATCATCAATGGATTCCCAAG
CAAAAATTGATCAAATTAAACAATTTTTCACAGATGCTCATCCAATCCCAGCCTCTTCGT
TGGCAAATGCTATATCAAGTATTCAATACAATAGAATGGTTAAAAAACCAAGCACCNAAC
TTGTATTTTTTAAATAAANATTANATTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
IYSNIKLPGNVIPIHYFTHVDIRMEPKFNFNGTIVSTLNITSDKNDFIVIHADESTLSLN
SIHLVSVPKYNSSKPVNSTDFDLESSITPTNKVYSPENSYYILFFKDLKKFLDKNGSIFN
LYISYNGSLVDSEGTSTLRGLYLSSYKNPSNHSESKYLAVTQFEPVDARLSFPCFDEPSL
KANWTIWITH---

---SFVHNRLETVVPCYIQYIKKAQYIFNKGLLPLIKLNITSDDELSL*sigikkiclfk
skllinyffknss*snlfr*y*ytrky*sin*ssiilinytkw*y*ri*mgs**i*kykc
nq*knrcfesnfqskestin*kyfknafrw*n*ksrllygflgnviftickrislelfir
*f*fhfrefntr*yw*icnlfciingfpskn*sn*tifhrcssnpslfvgkcyikysiq*
ng*ktkhxtcif*ixixf
Translated Amino Acid sequence (All Frames) 
Frame A:
IYSNIKLPGNVIPIHYFTHVDIRMEPKFNFNGTIVSTLNITSDKNDFIVIHADESTLSLN
SIHLVSVPKYNSSKPVNSTDFDLESSITPTNKVYSPENSYYILFFKDLKKFLDKNGSIFN
LYISYNGSLVDSEGTSTLRGLYLSSYKNPSNHSESKYLAVTQFEPVDARLSFPCFDEPSL
KANWTIWITH---

---fhlftiv*kplfhvifntlkklntfsikayyhssnlillrmmnspynqlelrksafs
kvnslsitslrihlnqiyldnidtpenidpsiraplfssiiqngdieeyewvvnrfentn
aineridalkaisnpknpqlirntlkmlldgkiksqdfymvflemsyspfarelawnfll
dnfnfisenstpgdigkyvtyfassmdsqakidqikqfftdahpipasslanaissiqyn
rmvkkpstxlvffk*xlxf

Frame B:
yiqilnyqvmlyqfiilhmsilewnqnlismvqlfqh*ilqaikmill*fmqmkahyh*i
vft*yqyqniivqnrsivpisiwshlslqqiksivpkiaitsyflri*ksf*ikmevfli
yilvimdh*liqkvrvh*edyiyhhiriqviivnqsi*q*hnlnqlmqdyhfhvlmnhh*
kpigqfglhi---

---ficsqsfrnrcsmlysih*kssihfq*rlitthqt*yyfg**tlpiinwn*enlpfq
k*tpyqlll*efilikfi*iilihqkilihqlelhyshqlykmvilknmng*lidlkiqm
qsmkesml*kqfpiqrihn*leil*kcf*mvklkvktfiwfswkchihhlqen*lgtfy*
iilisfqriqhqvilvnm*pilhhqwipkqkliklnnfsqmliqsqplrwqmlyqvfnti
ewlknqapnlyflnkxxi

Frame C:
ifky*itr*cytnslfytcry*ngtki*fqwyncfnieyykr*k*fycdscr*khiiik*
yslsistki**fktgq*yrfrfgviyhsnk*sl*srk*llhlif*gfekvfr*kwkyf*f
iy*l*wiis*frryeyikriifiii*esk*s**ikvfssnti*ts*ckiiismf**tiie
sqldnldyt---

---SFVHNRLETVVPCYIQYIKKAQYIFNKGLLPLIKLNITSDDELSL*sigikkiclfk
skllinyffknss*snlfr*y*ytrky*sin*ssiilinytkw*y*ri*mgs**i*kykc
nq*knrcfesnfqskestin*kyfknafrw*n*ksrllygflgnviftickrislelfir
*f*fhfrefntr*yw*icnlfciingfpskn*sn*tifhrcssnpslfvgkcyikysiq*
ng*ktkhxtcif*ixixf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD666 (SHD666Q) /CSM/SH/SHD6-C/SHD666Q.Seq.d/                       2597   0.0
CHI763 (CHI763Q) /CSM/CH/CHI7-C/CHI763Q.Seq.d/                       1491   0.0
CHQ511 (CHQ511Q) /CSM/CH/CHQ5-A/CHQ511Q.Seq.d/                       1485   0.0
CHS443 (CHS443Q) /CSM/CH/CHS4-B/CHS443Q.Seq.d/                       1483   0.0
AFN664 (AFN664Q) /CSM/AF/AFN6-C/AFN664Q.Seq.d/                       1455   0.0
SFG193 (SFG193Q) /CSM/SF/SFG1-D/SFG193Q.Seq.d/                       1443   0.0
AHD842 (AHD842Q) /CSM/AH/AHD8-B/AHD842Q.Seq.d/                       1433   0.0
CFF794 (CFF794Q) /CSM/CF/CFF7-D/CFF794Q.Seq.d/                       1427   0.0
AHK294 (AHK294Q) /CSM/AH/AHK2-D/AHK294Q.Seq.d/                       1413   0.0
CFK367 (CFK367Q) /CSM/CF/CFK3-C/CFK367Q.Seq.d/                       1400   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   672   0.0    9
DN815134|AF148323_1 aminopeptidase PILS [Rattus norvegicus], mRNA sequence.    66   2e-06  1
BP514490|BP514490.1 Hydra magnipapillata cDNA, clone:hydmg018bw_14.    66   2e-06  1
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    34   0.013  11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36   0.016  14
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC.    40   0.017  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   0.018  15
AX344574|AX344574.1 Sequence 25 from Patent WO0200932.             40   0.020  2
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   0.026  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   0.064  17
dna update 2006. 2. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920433_347(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    82   4e-14
CR380956_8(CR380956|pid:none) Candida glabrata strain CBS138 chr...    80   1e-13
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    80   1e-13
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...    76   2e-12
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...    75   7e-12
AE014297_3155(AE014297|pid:none) Drosophila melanogaster chromos...    75   7e-12
(P32454) RecName: Full=Aminopeptidase 2, mitochondrial;         ...    74   1e-11
S37794(S37794;S37987;S44571;S19642) aminopeptidase yscII (EC 3.4...    74   1e-11
AE014297_4532(AE014297|pid:none) Drosophila melanogaster chromos...    73   2e-11
CR559943_8(CR559943|pid:none) Zebrafish DNA sequence from clone ...    72   6e-11
protein update 2009. 4.16
PSORT 

 psg: 0.86  gvh: 0.33  alm: 0.49  top: 0.47  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHD666 is cyt
5' end seq. ID SHD666F
5' end seq. 
>SHD666F.Seq
ATATATTCAAATATTAAATTACCAGGTAATGTTATACCAATTCATTATTTTACACATGTC
GATATTAGAATGGAACCAAAATTTAATTTCAATGGTACAATTGTTTCAACATTGAATATT
ACAAGCGATAAAAATGATTTTATTGTGATTCATGCAGATGAAAGCACATTATCATTAAAT
AGTATTCACTTAGTATCAGTACCAAAATATAATAGTTCAAAACCGGTCAATAGTACCGAT
TTCGATTTGGAGTCATCTATCACTCCAACAAATAAAGTCTATAGTCCCGAAAATAGCTAT
TACATCTTATTTTTTAAGGATTTGAAAAAGTTTTTAGATAAAAATGGAAGTATTTTTAAT
TTATATATTAGTTATAATGGATCATTAGTTGATTCAGAAGGTACGAGTACATTAAGAGGA
TTATATTTATCATCATATAAGAATCCAAGTAATCATAGTGAATCAAAGTATTTAGCAGTA
ACACAATTTGAACCAGTTGATGCAAGATTATCATTTCCATGTTTTGATGAACCATCATTG
AAAGCCAATTGGACAATTTGGATTACACATCNNNNNNNNNN
Length of 5' end seq. 581
3' end seq. ID SHD666Z
3' end seq. 
>SHD666Z.Seq
NNNNNNNNNNTTTCATTTGTTCACAATCGTTTAGAAACCGTTGTTCCATGTTATATTCAA
TACATTAAAAAAGCTCAATACATTTTCAATAAAGGCTTATTACCACTCATCAAACTTAAT
ATTACTTCGGATGATGAACTCTCCCTATAATCAATTGGAATTAAGAAAATCTGCCTTTTC
AAAAGTAAACTCCTTATCAATTACTTCTTTAAGAATTCATCTTAATCAAATTTATTTAGA
TAATATTGATACACCAGAAAATATTGATCCATCAATTAGAGCTCCATTATTCTCATCAAT
TATACAAAATGGTGATATTGAAGAATATGAATGGGTAGTTAATAGATTTGAAAATACAAA
TGCAATCAATGAAAGAATCGATGCTTTGAAAGCAATTTCCAATCCAAAGAATCCACAATT
AATTAGAAATACTTTAAAAATGCTTTTAGATGGTAAAATTAAAAGTCAAGACTTTTATAT
GGTTTTCTTGGAAATGTCATATTCACCATTTGCAAGAGAATTAGCTTGGAACTTTTTATT
AGATAATTTTAATTTCATTTCAGAGAATTCAACACCAGGTGATATTGGTAAATATGTAAC
CTATTTTGCATCATCAATGGATTCCCAAGCAAAAATTGATCAAATTAAACAATTTTTCAC
AGATGCTCATCCAATCCCAGCCTCTTCGTTGGCAAATGCTATATCAAGTATTCAATACAA
TAGAATGGTTAAAAAACCAAGCACCNAACTTGTATTTTTTAAATAAANATTANATTTT
Length of 3' end seq. 778
Connected seq. ID SHD666P
Connected seq. 
>SHD666P.Seq
ATATATTCAAATATTAAATTACCAGGTAATGTTATACCAATTCATTATTTTACACATGTC
GATATTAGAATGGAACCAAAATTTAATTTCAATGGTACAATTGTTTCAACATTGAATATT
ACAAGCGATAAAAATGATTTTATTGTGATTCATGCAGATGAAAGCACATTATCATTAAAT
AGTATTCACTTAGTATCAGTACCAAAATATAATAGTTCAAAACCGGTCAATAGTACCGAT
TTCGATTTGGAGTCATCTATCACTCCAACAAATAAAGTCTATAGTCCCGAAAATAGCTAT
TACATCTTATTTTTTAAGGATTTGAAAAAGTTTTTAGATAAAAATGGAAGTATTTTTAAT
TTATATATTAGTTATAATGGATCATTAGTTGATTCAGAAGGTACGAGTACATTAAGAGGA
TTATATTTATCATCATATAAGAATCCAAGTAATCATAGTGAATCAAAGTATTTAGCAGTA
ACACAATTTGAACCAGTTGATGCAAGATTATCATTTCCATGTTTTGATGAACCATCATTG
AAAGCCAATTGGACAATTTGGATTACACATC----------TTTCATTTGTTCACAATCG
TTTAGAAACCGTTGTTCCATGTTATATTCAATACATTAAAAAAGCTCAATACATTTTCAA
TAAAGGCTTATTACCACTCATCAAACTTAATATTACTTCGGATGATGAACTCTCCCTATA
ATCAATTGGAATTAAGAAAATCTGCCTTTTCAAAAGTAAACTCCTTATCAATTACTTCTT
TAAGAATTCATCTTAATCAAATTTATTTAGATAATATTGATACACCAGAAAATATTGATC
CATCAATTAGAGCTCCATTATTCTCATCAATTATACAAAATGGTGATATTGAAGAATATG
AATGGGTAGTTAATAGATTTGAAAATACAAATGCAATCAATGAAAGAATCGATGCTTTGA
AAGCAATTTCCAATCCAAAGAATCCACAATTAATTAGAAATACTTTAAAAATGCTTTTAG
ATGGTAAAATTAAAAGTCAAGACTTTTATATGGTTTTCTTGGAAATGTCATATTCACCAT
TTGCAAGAGAATTAGCTTGGAACTTTTTATTAGATAATTTTAATTTCATTTCAGAGAATT
CAACACCAGGTGATATTGGTAAATATGTAACCTATTTTGCATCATCAATGGATTCCCAAG
CAAAAATTGATCAAATTAAACAATTTTTCACAGATGCTCATCCAATCCCAGCCTCTTCGT
TGGCAAATGCTATATCAAGTATTCAATACAATAGAATGGTTAAAAAACCAAGCACCNAAC
TTGTATTTTTTAAATAAANATTANATTTT
Length of connected seq. 1339
Full length Seq ID -
Full length Seq. -
Length of full length seq. -