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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ179
Library AF
(Link to library)
Clone ID AFJ179
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15623-1
Original site URL
Representative seq. ID AFJ179P
(Link to Original site)
Representative DNA sequence 
>AFJ179 (AFJ179Q) /CSM/AF/AFJ1-D/AFJ179Q.Seq.d/
CACTGTTGGCCTACTGGAAACATTTGTAGTGTTTAATTNTTATAAATAATTTTTTATACC
CTTGTAAATAATTTAAAATGAATAGTTATGATAATTCATCAATTGTTTTTATTTTTTGTG
GTCAAGCTACACTTTGGAAAACAATGGCATTAGAACTTTATAGTGGAAATCGAATTTTTA
GAGAATCAATGGATAGAATTGATAATTATTTAAAAATAAATTATTTTGATGGTGAATCAA
TGTTAAATAAATTAAGATCACTTGGTGATGATGAATCTCCAAATAAAGATCAATATTTAA
CACATTCAGTTTTATTTATGTTTCAAGTTTCATTATTTGAATTATATAAAAGCGAAGGTG
TAAATCCATCTTTTATTTATGGTGTTAGTTGTGGAGAAATGGCAAGTTTATATTGCTCTG
GTGCATTAACATTAAAATCAGCATGTGATTTAATAATGGACAGAGCAAAGTTATTGGATG
TTGCGTTGAAAAAGTGNCCAANAGGATTTTCATTTTTTGGTXXXXXXXXXXGCACNTTCC
TCNTTNAATAAAAACAATAATGACAATATTCATTTTAATGAAATTTTANAAATTTTAAAA
ANAAANTTATAACTTTAATAATAGTAATAATAATAATAATAATAATAATAATAATAATAA
TAATATAAGATTACNCAANAATTAAATAAAAATAAAATAAAAAAAAATAAAATTAACACC
ACNAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywkhl*clixinnflypck*FKMNSYDNSSIVFIFCGQATLWKTMALELYSGNRIFR
ESMDRIDNYLKINYFDGESMLNKLRSLGDDESPNKDQYLTHSVLFMFQVSLFELYKSEGV
NPSFIYGVSCGEMASLYCSGALTLKSACDLIMDRAKLLDVALKKXPXGFSFFG---

---AXSSXNKNNNDNIHFNEILXILKXXL*l****************ykitqxlnknkik
knkinttkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgnicsv*xl*iifytlvnnlk*ivmiihqlflffvvklhfgkqwh*nfiveiefl
enqwieliii*k*iilmvnqc*in*dhlvmmnlqikini*hiqfylcfkfhylnyikakv
*ihllfmvlvvekwqvyialvh*h*nqhvi**wteqsywmlr*ksxqxdfhfl---

---AXSSXNKNNNDNIHFNEILXILKXXL*l****************ykitqxlnknkik
knkinttkk

Frame B:
tvglletfvvfnxyk*ffipl*ii*ne*l**fincfyflwssytlenngirtl*wksnf*
ring*n**lfknklf*w*invk*ikitw***isk*rsifntfsfiyvssfii*ii*krrc
ksifylwc*lwrngkfillwcinikism*fnngqskvigccvekvxxrififw---

---hxpxxiktimtifilmkfxkf*kxxynfnnsnnnnnnnnnnnnnirlxxn*ikik*k
kikltpxkk

Frame C:
llaywkhl*clixinnflypck*FKMNSYDNSSIVFIFCGQATLWKTMALELYSGNRIFR
ESMDRIDNYLKINYFDGESMLNKLRSLGDDESPNKDQYLTHSVLFMFQVSLFELYKSEGV
NPSFIYGVSCGEMASLYCSGALTLKSACDLIMDRAKLLDVALKKXPXGFSFFG---

---tflxx*kq**qysf**nfxnfkxkxitliiviiiiiiiiiiiii*dyxxik*k*nkk
k*n*hhxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ179 (AFJ179Q) /CSM/AF/AFJ1-D/AFJ179Q.Seq.d/                       1009   0.0
SSL761 (SSL761Q) /CSM/SS/SSL7-C/SSL761Q.Seq.d/                        902   0.0
AFJ713 (AFJ713Q) /CSM/AF/AFJ7-A/AFJ713Q.Seq.d/                        500   e-140
SSG173 (SSG173Q) /CSM/SS/SSG1-D/SSG173Q.Seq.d/                         48   2e-04
CFE362 (CFE362Q) /CSM/CF/CFE3-C/CFE362Q.Seq.d/                         48   2e-04
AFB633 (AFB633Q) /CSM/AF/AFB6-B/AFB633Q.Seq.d/                         48   2e-04
AFH785 (AFH785Q) /CSM/AF/AFH7-D/AFH785Q.Seq.d/                         46   7e-04
VFN338 (VFN338Q) /CSM/VF/VFN3-B/VFN338Q.Seq.d/                         44   0.003
VFC310 (VFC310Q) /CSM/VF/VFC3-A/VFC310Q.Seq.d/                         44   0.003
SLB603 (SLB603Q) /CSM/SL/SLB6-A/SLB603Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    46   3e-10  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   6e-08  20
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    44   2e-07  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   2e-07  23
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    36   2e-07  15
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   3e-07  17
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   5e-07  17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   2e-06  20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   2e-06  18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   2e-06  16
dna update 2004. 9.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   100   4e-20
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   100   6e-20
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...    93   9e-18
AC116982_28(AC116982|pid:none) Dictyostelium discoideum chromoso...    91   4e-17
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...    89   1e-16
AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso...    87   5e-16
AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso...    84   4e-15
AC116982_72(AC116982|pid:none) Dictyostelium discoideum chromoso...    84   4e-15
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso...    79   1e-13
BX005238_11(BX005238|pid:none) Zebrafish DNA sequence from clone...    79   1e-13
protein update 2009. 4.23
PSORT 

 psg: 0.96  gvh: 0.45  alm: 0.38  top: 0.40  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 16.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AFJ179 is cyt
5' end seq. ID AFJ179F
5' end seq. 
>AFJ179F.Seq
CACTGTTGGCCTACTGGAAACATTTGTAGTGTTTAATTNTTATAAATAATTTTTTATACC
CTTGTAAATAATTTAAAATGAATAGTTATGATAATTCATCAATTGTTTTTATTTTTTGTG
GTCAAGCTACACTTTGGAAAACAATGGCATTAGAACTTTATAGTGGAAATCGAATTTTTA
GAGAATCAATGGATAGAATTGATAATTATTTAAAAATAAATTATTTTGATGGTGAATCAA
TGTTAAATAAATTAAGATCACTTGGTGATGATGAATCTCCAAATAAAGATCAATATTTAA
CACATTCAGTTTTATTTATGTTTCAAGTTTCATTATTTGAATTATATAAAAGCGAAGGTG
TAAATCCATCTTTTATTTATGGTGTTAGTTGTGGAGAAATGGCAAGTTTATATTGCTCTG
GTGCATTAACATTAAAATCAGCATGTGATTTAATAATGGACAGAGCAAAGTTATTGGATG
TTGCGTTGAAAAAGTGNCCAANAGGATTTTCATTTTTTGGT----------
Length of 5' end seq. 521
3' end seq. ID AFJ179Z
3' end seq. 
>AFJ179Z.Seq
----------GCACNTTCCTCNTTNAATAAAAACAATAATGACAATATTCATTTTAATGA
AATTTTANAAATTTTAAAAANAAANTTATAACTTTAATAATAGTAATAATAATAATAATA
ATAATAATAATAATAATAATAATATAAGATTACNCAANAATTAAATAAAAATAAAATAAA
AAAAAATAAAATTAACACCACNAAAAAAA
Length of 3' end seq. 199
Connected seq. ID AFJ179P
Connected seq. 
>AFJ179P.Seq
CACTGTTGGCCTACTGGAAACATTTGTAGTGTTTAATTNTTATAAATAATTTTTTATACC
CTTGTAAATAATTTAAAATGAATAGTTATGATAATTCATCAATTGTTTTTATTTTTTGTG
GTCAAGCTACACTTTGGAAAACAATGGCATTAGAACTTTATAGTGGAAATCGAATTTTTA
GAGAATCAATGGATAGAATTGATAATTATTTAAAAATAAATTATTTTGATGGTGAATCAA
TGTTAAATAAATTAAGATCACTTGGTGATGATGAATCTCCAAATAAAGATCAATATTTAA
CACATTCAGTTTTATTTATGTTTCAAGTTTCATTATTTGAATTATATAAAAGCGAAGGTG
TAAATCCATCTTTTATTTATGGTGTTAGTTGTGGAGAAATGGCAAGTTTATATTGCTCTG
GTGCATTAACATTAAAATCAGCATGTGATTTAATAATGGACAGAGCAAAGTTATTGGATG
TTGCGTTGAAAAAGTGNCCAANAGGATTTTCATTTTTTGGT----------GCACNTTCC
TCNTTNAATAAAAACAATAATGACAATATTCATTTTAATGAAATTTTANAAATTTTAAAA
ANAAANTTATAACTTTAATAATAGTAATAATAATAATAATAATAATAATAATAATAATAA
TAATATAAGATTACNCAANAATTAAATAAAAATAAAATAAAAAAAAATAAAATTAACACC
ACNAAAAAAA
Length of connected seq. 720
Full length Seq ID -
Full length Seq. -
Length of full length seq. -