SHD624
Library SH
(Link to library)
Clone ID SHD624
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHD624 (SHD624Q) /CSM/SH/SHD6-A/SHD624Q.Seq.d/
XXXXXXXXXXCCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAG
TTGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTT
AAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTC
AATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTG
TCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAAC
CACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTAC
AGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAA
AAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAA
ATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGT
TAAAAATCCAAATTCCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATT
CACACCAGTTTGCAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---SDDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSI
GGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATG
HYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVK
NPNSISSKHSCYGESCCKFTPVCK


Translated Amino Acid sequence (All Frames)
Frame A:
---hqmmhviykyvlkleivvlqwf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfq
lvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglq
vitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwl
kiqipflvnivvmvnhvvnshqfa


Frame B:
---ir*cm*ftsmf*nwr*lsyngfkl****rly*r*vfkywylsk*sn*rlcytitsfn
wwnypsnhywcits*v*llsnwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyr
slhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*
kskfhf**t*llw*iml*ihtslq


Frame C:
---SDDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSI
GGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATG
HYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVK
NPNSISSKHSCYGESCCKFTPVCK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD624 (SHD624Q) /CSM/SH/SHD6-A/SHD624Q.Seq.d/ 1201 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1193 0.0
SHF242 (SHF242Q) /CSM/SH/SHF2-B/SHF242Q.Seq.d/ 1193 0.0
SHB522 (SHB522Q) /CSM/SH/SHB5-A/SHB522Q.Seq.d/ 1193 0.0
SHB423 (SHB423Q) /CSM/SH/SHB4-A/SHB423Q.Seq.d/ 1193 0.0
SHA693 (SHA693Q) /CSM/SH/SHA6-D/SHA693Q.Seq.d/ 1193 0.0
CHG220 (CHG220Q) /CSM/CH/CHG2-A/CHG220Q.Seq.d/ 1193 0.0
AHE486 (AHE486Q) /CSM/AH/AHE4-D/AHE486Q.Seq.d/ 1193 0.0
AHE126 (AHE126Q) /CSM/AH/AHE1-B/AHE126Q.Seq.d/ 1193 0.0
AHB727 (AHB727Q) /CSM/AH/AHB7-B/AHB727Q.Seq.d/ 1193 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence. 46 0.88 1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 1.2 3
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces. 34 1.8 2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
dna update 2006. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 380 e-104
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 211 2e-53
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 52 1e-05
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 47 4e-04
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 44 0.003
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 44 0.003
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 44 0.003
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 44 0.004
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 44 0.005
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 44 0.005
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.40 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SHD624 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHD624Z
3' end seq.
>SHD624Z.Seq
NNNNNNNNNNCCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAG
TTGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTT
AAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTC
AATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTG
TCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAAC
CACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTAC
AGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAA
AAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAA
ATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGT
TAAAAATCCAAATTCCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATT
CACACCAGTTTGCAAA
Length of 3' end seq. 616
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -