AFJ176
Library AF
(Link to library)
Clone ID AFJ176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14921-1
Original site URL
Representative seq. ID AFJ176F
(Link to Original site)
Representative DNA sequence
>AFJ176 (AFJ176Q) /CSM/AF/AFJ1-D/AFJ176Q.Seq.d/
AACTTTGTAAAGATTTCTTCATTACCAGAAACTTATACAAATAATATTTATTTCAATTTA
AATTAAATAGTTTTATTTTATTTTTTTCAATTTTATTTTATTTGTGTATTTTTAAAAAAA
ACCAACAATCAACAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
lckdffitrnlyk*YLFQFKLNSFILFFSILFYLCIFKKNQQST---


Translated Amino Acid sequence (All Frames)
Frame A:
nfvkisslpetytnniyfnln*ivlfyffqfyficvflkktnnq---


Frame B:
tl*rflhyqkliqiifisi*ik*fyfiffnfilfvyf*kkptin---


Frame C:
lckdffitrnlyk*YLFQFKLNSFILFFSILFYLCIFKKNQQST---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM435 (AFM435Q) /CSM/AF/AFM4-B/AFM435Q.Seq.d/ 78 4e-14
AFL867 (AFL867Q) /CSM/AF/AFL8-C/AFL867Q.Seq.d/ 78 4e-14
AFJ176 (AFJ176Q) /CSM/AF/AFJ1-D/AFJ176Q.Seq.d/ 78 4e-14
AFG385 (AFG385Q) /CSM/AF/AFG3-D/AFG385Q.Seq.d/ 78 4e-14
AFF464 (AFF464Q) /CSM/AF/AFF4-C/AFF464Q.Seq.d/ 78 4e-14
AFE176 (AFE176Q) /CSM/AF/AFE1-D/AFE176Q.Seq.d/ 78 4e-14
AFD240 (AFD240Q) /CSM/AF/AFD2-B/AFD240Q.Seq.d/ 78 4e-14
AFC412 (AFC412Q) /CSM/AF/AFC4-A/AFC412Q.Seq.d/ 78 4e-14
AFA840 (AFA840Q) /CSM/AF/AFA8-B/AFA840Q.Seq.d/ 78 4e-14
AFA512 (AFA512Q) /CSM/AF/AFA5-A/AFA512Q.Seq.d/ 78 4e-14

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L13999|L13999.1 Dictyostelium discoideum alpha tubulin (TUBA) gene, complete cds. 78 2e-12 2
CD065797|CD065797.1 MA1-0045U-V025-A06-U.B MA1-0045 Schistosoma mansoni cDNA clone MA1-0045U-V025-A06.B, mRNA sequence. 30 4.1 2
CO535239|CO535239.1 tai03c04.x1 HyEch JUMY T1 Hydractinia echinata cDNA 3', mRNA sequence. 40 8.6 1
AC087781|AC087781.17 Mus musculus chromosome 1 clone rp23-370c6 strain C57BL/6J, complete sequence. 40 8.6 1
CO535493|CO535493.1 tai03c04.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5', mRNA sequence. 40 8.6 1
AC106085|AC106085.5 Rattus norvegicus clone CH230-125G16, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 40 8.6 1
AC127059|AC127059.3 Rattus norvegicus clone CH230-103G11, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 40 8.6 1
AC110947|AC110947.5 Rattus norvegicus clone CH230-17C5, WORKING DRAFT SEQUENCE, 3 unordered pieces. 40 8.6 1
AL773550|AL773550.4 Mouse DNA sequence from clone RP23-433P3 on chromosome 4. 40 8.6 1
AQ058938|AQ058938.1 CIT-HSP-2355B1.TR CIT-HSP Homo sapiens genomic clone 2355B1, genomic survey sequence. 34 9.7 2
dna update 2004. 9.24
Homology vs Protein

***** No hits found ******

Lambda K H
0.309 0.125 0.344

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 92,813,845
protein update 2009. 4.23
PSORT

psg: 1.00 gvh: 0.47 alm: 0.25 top: 0.53 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.71 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFJ176 is end

5' end seq. ID AFJ176F
5' end seq.
>AFJ176F.Seq
AACTTTGTAAAGATTTCTTCATTACCAGAAACTTATACAAATAATATTTATTTCAATTTA
AATTAAATAGTTTTATTTTATTTTTTTCAATTTTATTTTATTTGTGTATTTTTAAAAAAA
ACCAACAATCAACAA----------
Length of 5' end seq. 135
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -