>SHD615 (SHD615Q) /CSM/SH/SHD6-A/SHD615Q.Seq.d/
XXXXXXXXXXCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGTGG
TGGTGGTAAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACA
AGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAA
TCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAG
TTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAG
CACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGT
CATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTT
CCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCAT
GTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACA
TGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTAG
AAAGAAAGCTCCAAATCAAGAAATCTCTTTCCTCTCTTGTAA

---FNGNSNDLSFLGGGGGGGKVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNL
LNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVI
DMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHV
DVDSILRRLNSKNIFEIVRKKAPNQEISFLSC

Frame A:
---nlmviqmiyhf*vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*i
f*iqvnkvcqnsrfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqs
liwq*wyyqvkrdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm
*mltlsfvv*ivrislkslerklqikkslsslv


Frame B:
---i*w*fk*fiifrwwwwww*sssts**scciww**itsnsn*wsiykipr*n*friks
feykstryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh
*ygndgitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttc
rc*lypssfk**eyl*nr*kessksrnlfpll*


Frame C:
---FNGNSNDLSFLGGGGGGGKVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNL
LNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVI
DMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHV
DVDSILRRLNSKNIFEIVRKKAPNQEISFLSC

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/                       1140   0.0
SHD615 (SHD615Q) /CSM/SH/SHD6-A/SHD615Q.Seq.d/                       1140   0.0
SHA570 (SHA570Q) /CSM/SH/SHA5-C/SHA570Q.Seq.d/                       1138   0.0
AHK359 (AHK359Q) /CSM/AH/AHK3-C/AHK359Q.Seq.d/                       1138   0.0
AHE651 (AHE651Q) /CSM/AH/AHE6-C/AHE651Q.Seq.d/                       1138   0.0
SHA168 (SHA168Q) /CSM/SH/SHA1-C/SHA168Q.Seq.d/                       1134   0.0
VHI676 (VHI676Q) /CSM/VH/VHI6-D/VHI676Q.Seq.d/                       1132   0.0
VFF468 (VFF468Q) /CSM/VF/VFF4-C/VFF468Q.Seq.d/                       1130   0.0
CHN465 (CHN465Q) /CSM/CH/CHN4-C/CHN465Q.Seq.d/                       1130   0.0
SHF674 (SHF674Q) /CSM/SH/SHF6-D/SHF674Q.Seq.d/                       1122   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC166018|AC166018.2 Oryctolagus cuniculus clone LB1-246C1, WORKING DRAFT SEQUENCE, 3 ordered pieces.    50   0.059  1
AC138052|AC138052.2 Felis catus clone RP86-222L20, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38   0.90   3
CX072513|CX072513.1 UCRCS08_28E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-4.g, mRNA sequence.    46   0.92   1
CX072512|CX072512.1 UCRCS08_28E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-5.b, mRNA sequence.    46   0.92   1
AC140642|AC140642.5 Macaca mulatta clone CH250-288A22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46   0.92   1
AC147774|AC147774.3 Medicago truncatula chromosome 2 BAC clone mth2-10c8, complete sequence.    46   0.92   1
CE759919|CE759919.1 tigr-gss-dog-17000369972948 Dog Library Canis familiaris genomic, genomic survey sequence.    34   5.8    2
AC146749|AC146749.23 Medicago truncatula clone mth2-145a1, complete sequence.    30   6.6    2
AC121241|AC121241.32 Medicago truncatula clone mth2-4n3, complete sequence.    30   6.7    2
AC138793|AC138793.1 Homo sapiens chromosome 16 clone CTD-2072N6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   9.5    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   399   e-110
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   110   3e-23
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   110   3e-23
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   110   3e-23
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   110   3e-23
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   110   3e-23
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   110   3e-23
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   110   3e-23
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   110   3e-23
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   109   6e-23

 psg: 0.75  gvh: 0.39  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.02  mip: 0.09
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SHD615 is cyt

>SHD615Z.Seq
NNNNNNNNNNCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGTGG
TGGTGGTAAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACA
AGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAA
TCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAG
TTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAG
CACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGT
CATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTT
CCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCAT
GTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACA
TGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTAG
AAAGAAAGCTCCAAATCAAGAAATCTCTTTCCTCTCTTGTAA