SHD602 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHD602
Library	SH (Link to library)
Clone ID	SHD602 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13024-1\|Contig-U16344-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHD6-A/SHD602Q.Seq.d/
Representative seq. ID	SHD602P (Link to Original site)
Representative DNA sequence	>SHD602 (SHD602Q) /CSM/SH/SHD6-A/SHD602Q.Seq.d/ TGGCCTACTGGAAAACAAACAAAAAACAACAATTTAAAAAAAACAATAATTTATAGTAAA GTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATA TTTTTTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTAT ATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTG TATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAA AAXXXXXXXXXXGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAA GGTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTC AACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCT TTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTC AACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTC GTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCC TCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCA GTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCT CAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCT AAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAA ATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATT TTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTT TTCAATTTTAAAACAATAAAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	wptgkqtknnnlkktiiyskvktikeslivffssslipifffklissfsvflhnhnqpy iittnpiplqsyllnnyyllyyfsvylliYLLASNKQKK--- ---GSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDAL MSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVAS EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASK VWSIVNSPCNCECGLKRLidstpplqqikiiqliliflysnqcicqltylfkhtlf nfktik
Translated Amino Acid sequence (All Frames)	Frame A: wptgkqtknnnlkktiiyskvktikeslivffssslipifffklissfsvflhnhnqpy iittnpiplqsyllnnyyllyyfsvylliYLLASNKQKK--- ---GSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDAL MSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVAS EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASK VWSIVNSPCNCECGLKRLidstpplqqikiiqliliflysnqcicqltylfkhtlf nfktik Frame B: gllenkqkttikkqfivkkqlknhlffspphykfqyfflnfpaflffytittnpi sllptlyhynliyiiiicciilvyicfniyqvtnkkk--- ---vqlnqkllislmvpfkvlvllnvvlvtlpirslltstllvtlkwpqlqlsmqtlml* cqsppqpkpqslnhqprlstvrpplnhhqahhhpslnnsfqsfvqvllmllvtsmslpq kpiklklplvlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllplk fgqlihhvtvnvdrdykliqlllsndnklkynsflfffiltnvfvnlinflntpfs ilkqk Frame C: aywktnkkqqfkknnnl*sknnritncffllltinsniffinfqlfcfftqsqptly hyyqpytitilfikllfvvlfcifvdlifiskqtkkk--- ---fniksyfhswyhsrcwcsmwyllcqdrcpqhcwrngrncnclckhcfn vnhhlnpnlnlsiinqdcqrdhhsiiikliiihltirsndrlfrycccwpqcrclr sqssnclwyciqihlspscrcllslshlkhccccstscrccccccpkscygccls lvnckftmlmwieeiinfnssspmtinnntthsyfslfpmylsinlltfthpfq f*nnkn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 898 0.0 SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 898 0.0 SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 898 0.0 SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 898 0.0 SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/ 898 0.0 SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/ 898 0.0 SHG713 (SHG713Q) /CSM/SH/SHG7-A/SHG713Q.Seq.d/ 898 0.0 SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/ 898 0.0 SHG338 (SHG338Q) /CSM/SH/SHG3-B/SHG338Q.Seq.d/ 898 0.0 SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/ 898 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U83087\|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 898 0.0 2 AX344185\|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.077 4 AX251781\|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.077 4 BD460245\|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.077 4 BD452167\|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.077 4 AJ297856\|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.098 1 AL845362\|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20. 38 0.30 3 AC162431\|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE. 48 0.39 1 AC156169\|AC156169.2 Bos taurus clone CH240-50N13, * SEQUENCING IN PROGRESS *, 60 unordered pieces. 48 0.39 1 AC148223\|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces. 48 0.39 1
dna update	2006. 2. 4
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value U83087_1(U83087\|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 269 1e-70 AY530539_1(AY530539\|pid:none) Mimulus ringens deficiens (DEF) mR... 34 9.1
protein update	2008.11.15
PSORT	psg: 0.69 gvh: 0.45 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 44.0 %: nuclear 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for SHD602 is cyt
5' end seq. ID	SHD602F
5' end seq.	>SHD602F.Seq TGGCCTACTGGAAAACAAACAAAAAACAACAATTTAAAAAAAACAATAATTTATAGTAAA GTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATA TTTTTTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTAT ATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTG TATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAA AANNNNNNNNNN
Length of 5' end seq.	312
3' end seq. ID	SHD602Z
3' end seq.	>SHD602Z.Seq NNNNNNNNNNGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGG TGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAA CATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTT AATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAA CGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGT TCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTC AGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGT TGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCA ACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAA AGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAAT TGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTT TCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTT CAATTTTAAAACAATAAAAAT
Length of 3' end seq.	741
Connected seq. ID	SHD602P
Connected seq.	>SHD602P.Seq TGGCCTACTGGAAAACAAACAAAAAACAACAATTTAAAAAAAACAATAATTTATAGTAAA GTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATA TTTTTTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTAT ATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTG TATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAA AA----------GGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAA GGTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTC AACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCT TTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTC AACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTC GTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCC TCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCA GTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCT CAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCT AAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAA ATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATT TTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTT TTCAATTTTAAAACAATAAAAAT
Length of connected seq.	1033
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas