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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD573
Library SH
(Link to library)
Clone ID SHD573
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11503-1
Original site URL
Representative seq. ID SHD573E
(Link to Original site)
Representative DNA sequence 
>SHD573 (SHD573Q) /CSM/SH/SHD5-D/SHD573Q.Seq.d/
AGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCAATTTTGT
TTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAATTCAACGA
TTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGTTTTAATA
ACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTATTAATATCAA
ATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCAGAACAAATTA
CATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAATGAAAATA
ATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTCTGACATATGAACCAG
AAGAAGAAAATAACCAAACTCAATCATGTTCNAGATGACTCTTNTTTCAATATATGAATT
TCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAGCACTAAATTA
AACAACATCAACCACAACTACTTCAACAACATCAAACGCATCAGCTGGAACAACATCAAC
TACTTCAGCTGCAACAACACCAACCACATCAGCTTTAACAACATCAACTACAACTACAAC
ATCAANTACAACAACTATAANTACCTCAANTACATTACCATCAACATCAACAACAACAAG
TGCCNATTGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGGCTTGATCT
AT
sequence update 2002.10.27
Translated Amino Acid sequence 
fsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGCGFNN
EPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENINNENN
NYTIIDGSSSTQPFLTYEPEEENNQTQSCSR*lxfqymnftswdwk*frcefikkkh*ik
qhqpqllqqhqthqleqhqllqlqqhqphql*qhqlqlqhqxqql*xpqxhyhqhqqqqv
pidsktrniiivtvilgliy
Translated Amino Acid sequence (All Frames) 
Frame A:
sflckfini*lenqiifqfclqyf*klflwfqrryaqiqrfy*itts*rfiihqkdvvli
tsryahhskmllaehfy*yqiivvfvlvslvi*m*hqnklhwviivvpcgslqkisimki
iiiq*smdqaqpnhf*hmnqkkkitklnhvxddsxfni*isqvgignnsdvnlskkstkl
nninhnyfnnikriswnninyfscnntnhisfnninynynixynnyxylxyitininnnk
cxlivrlgilsllqlfwa*s


Frame B:
vffvnlliyd*kik*ffnfvcnifkncfcgfsaampkfndfiklqhpngl*firrmwf**
radmhitqrcc*qsifinik**sclywyhw*ykcnirtnyig*llwclvdhfrkyq**k*
*lynnrwiklnptisdi*trrrk*pnsimfxmtlxsiyefhklgleiiqm*iyqkkaln*
ttsttttsttsnasagttsttsaattpttsalttstttttsxtttixtsxtlpststtts
ax***d*eyyhcysyfgldl


Frame C:
fsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGCGFNN
EPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENINNENN
NYTIIDGSSSTQPFLTYEPEEENNQTQSCSR*lxfqymnftswdwk*frcefikkkh*ik
qhqpqllqqhqthqleqhqllqlqqhqphql*qhqlqlqhqxqql*xpqxhyhqhqqqqv
pidsktrniiivtvilgliy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD573 (SHD573Q) /CSM/SH/SHD5-D/SHD573Q.Seq.d/                       1283   0.0
AHK839 (AHK839Q) /CSM/AH/AHK8-B/AHK839Q.Seq.d/                        829   0.0
AHF753 (AHF753Q) /CSM/AH/AHF7-C/AHF753Q.Seq.d/                        829   0.0
VHI729 (VHI729Q) /CSM/VH/VHI7-B/VHI729Q.Seq.d/                        823   0.0
VHE495 (VHE495Q) /CSM/VH/VHE4-D/VHE495Q.Seq.d/                        823   0.0
SHC657 (SHC657Q) /CSM/SH/SHC6-C/SHC657Q.Seq.d/                        823   0.0
AHK570 (AHK570Q) /CSM/AH/AHK5-C/AHK570Q.Seq.d/                        823   0.0
AHA119 (AHA119Q) /CSM/AH/AHA1-A/AHA119Q.Seq.d/                        823   0.0
SHD533 (SHD533Q) /CSM/SH/SHD5-B/SHD533Q.Seq.d/                        821   0.0
AHH235 (AHH235Q) /CSM/AH/AHH2-B/AHH235Q.Seq.d/                        817   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC094130|AC094130.6 Rattus norvegicus clone CH230-3D11, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   3e-12  3
AC119641|AC119641.7 Rattus norvegicus clone CH230-428C17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   3e-12  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    52   7e-08  8
AY428796|AY428796.1 Dictyostelium discoideum DIF insensitive mutant A (dimA) gene, complete cds.    42   7e-08  3
AC126984|AC126984.4 Rattus norvegicus clone CH230-122F24, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   3e-07  2
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    42   4e-07  3
AC128373|AC128373.3 Rattus norvegicus clone CH230-160K22, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   1e-06  2
AC128211|AC128211.2 Rattus norvegicus clone CH230-34L7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    48   1e-06  2
AC097074|AC097074.5 Rattus norvegicus clone CH230-43O14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   1e-06  2
AC127217|AC127217.3 Rattus norvegicus clone CH230-11M5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   1e-06  2
dna update 2006. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020283_1(AF020283|pid:none) Dictyostelium discoideum DG2044 ge...    57   5e-07
CP000766_763(CP000766|pid:none) Rickettsia rickettsii str. Iowa,...    37   0.88
AE006914_723(AE006914|pid:none) Rickettsia conorii str. Malish 7...    35   3.4
protein update 2009. 4.16
PSORT 

 psg: 0.99  gvh: 0.48  alm: 0.21  top: 0.27  tms: 0.07  mit: 0.47  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: mitochondrial
	 20.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SHD573 is mit
5' end seq. ID SHD573F
5' end seq. 
>SHD573F.Seq
AGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCAATTTTGT
TTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAATTCAACGA
TTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGTTTTAATA
ACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTATTAATATCAA
ATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCAGAACAAATTA
CATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAATGAAAATA
ATAATTATACAATAATCGATGGATCAAGCTCAACCCANNNNNNNNNN
Length of 5' end seq. 407
3' end seq. ID SHD573Z
3' end seq. 
>SHD573Z.Seq
NNNNNNNNNNGGATCACTTCAGAAAATATCAATAATGAAAATAATAATTATACAATAATC
GAGGATCNAGCTCAACCCAACCATTTCTGACATATGAACCAGAAGAAGAAAATAACCAAA
CTCAATCATGTTCNAGATGACTCTTNTTTCAATATATGAATTTCACAAGTTGGGATTGGA
AATAATTCAGATGTGAATTTATCAAAAAAAAGCACTAAATTAAACAACATCAACCACAAC
TACTTCAACAACATCAAACGCATCAGCTGGAACAACATCAACTACTTCAGCTGCAACAAC
ACCAACCACATCAGCTTTAACAACATCAACTACAACTACAACATCAANTACAACAACTAT
AANTACCTCAANTACATTACCATCAACATCAACAACAACAAGTGCCNATTGATAGTAAGA
CTAGGAATATTATCATTGTTACAGTTATTTTGGGCTTGATCTAT
Length of 3' end seq. 464
Connected seq. ID SHD573P
Connected seq. 
>SHD573P.Seq
AGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCAATTTTGT
TTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAATTCAACGA
TTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGTTTTAATA
ACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTATTAATATCAA
ATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCAGAACAAATTA
CATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAATGAAAATA
ATAATTATACAATAATCGATGGATCAAGCTCAACCCA----------GGATCACTTCAGA
AAATATCAATAATGAAAATAATAATTATACAATAATCGAGGATCNAGCTCAACCCAACCA
TTTCTGACATATGAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCNAGATGACTC
TTNTTTCAATATATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATC
AAAAAAAAGCACTAAATTAAACAACATCAACCACAACTACTTCAACAACATCAAACGCAT
CAGCTGGAACAACATCAACTACTTCAGCTGCAACAACACCAACCACATCAGCTTTAACAA
CATCAACTACAACTACAACATCAANTACAACAACTATAANTACCTCAANTACATTACCAT
CAACATCAACAACAACAAGTGCCNATTGATAGTAAGACTAGGAATATTATCATTGTTACA
GTTATTTTGGGCTTGATCTAT
Length of connected seq. 851
Full length Seq ID SHD573E
Full length Seq. 
>SHD573E.Seq
AGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTTTCAATTTTGT
TTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCAAATTCAACGA
TTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGTGGTTTTAATA
ACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTATTAATATCAA
ATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCAGAACAAATTA
CATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAATAATGAAAATA
ATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTCTGACATATGAACCAG
AAGAAGAAAATAACCAAACTCAATCATGTTCNAGATGACTCTTNTTTCAATATATGAATT
TCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAGCACTAAATTA
AACAACATCAACCACAACTACTTCAACAACATCAAACGCATCAGCTGGAACAACATCAAC
TACTTCAGCTGCAACAACACCAACCACATCAGCTTTAACAACATCAACTACAACTACAAC
ATCAANTACAACAACTATAANTACCTCAANTACATTACCATCAACATCAACAACAACAAG
TGCCNATTGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGGCTTGATCT
AT
Length of full length seq. 782