SHD538
Library SH
(Link to library)
Clone ID SHD538
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15287-1|Contig-U15561-1
Original site URL
Representative seq. ID SHD538P
(Link to Original site)
Representative DNA sequence
>SHD538 (SHD538Q) /CSM/SH/SHD5-B/SHD538Q.Seq.d/
CTGAAACTCCATGGAAAACTGAAACAACAACAACAACAACAACTCCAAATGGTGCCACCA
CCACCACCACTACTACTACCACTACCACTACCACTGCTAGTACTTCAACAACAGCATCAG
CAAATATACTTCCTCAAGTTGCAGCTCCATTAAATAGAGGTAGAATTAGTAGAGCTCAAC
ATTCAAATGCTGCCATTCAAGAACCTAAAATTCCACATTATAAACAACCAATGAAAGTCG
AATATAAAGTTGAAAAGATTAATGTTTGTAAGGTTGGTTTATTCTATCATGTTGTATCAA
ATAATTGGCAAGGTGTTGCCTATATTATGTTGGACTCTGGTTTAGATAATTTCAGTGCAC
TTCATGATGCATTCAAAGCTGATAAATATCAATTGGCTCTAACTTTATTATCAAAATGTC
GTTCAGCTGCTGAATTATCACCATTATCACCAGAATCAAAACAAAACCTTTTCCATTTCA
TTGGTATGTACCCATCATCTGTTGCCAATTGGAGTGCTCGTGTTCAACAAAAATTATTAT
CATCTGGTGTTTCACCAAATCTCACTGATTCCACTGGTAGAACTCCACTTCACTATGCAG
CTGTCTCTGAAAATGTTCCXXXXXXXXXXTTACAAAACTTGGATGAACTTGAGACCGTTT
CAAAGATTTTGATTGCCGCTCACCAAAATACCACAATGCATCCATACGATTATTGTTTCA
AAGCTCTTGGTGCCTCTTTGGAGAAATTGGATGCCAACTCTCCAGAATTTGGTATCCTTA
AAAAGTACTCCGAGAATACCGGTTGCACAAAGAAGATTGTAAATATTTTCAAACTCCAAA
GAAAAGGAGAGGTTGAAAGATTCCAAGCTCATAAAAATCTCAAGAATCATTTCCTACTAT
GGCATGGTAGTTTAACAACAAACTATCTCTCCATTTTATCTCAAGGCTTAAAGATTGCTC
CACCAGAGGCTCCAGTCACTGGTTATATGTTTGGTAAAGGTATTTATTTCTCTGATATGT
TTAGAAAATCTATAAACTATTGCGGTAGTTGGGATAGTTCTTCAGCAAATAGTTTCCTCT
TACTCTCAGAGGTAGCTTTGGGTACAATGAAAGAATTTAAAAGCGCTCACTATATGGAAT
CCCCTGAAACTGGTACAAATAGTACTAAAGGTGTAGGTAAAACTGGTCCAAACTTTGACG
ATAGTATCATTTTAAATAATGGTGTTGCAATTCCTCTCTCTCCTCCAGAACAAGTTAAAG
GTGATACTTCCGATTATCACTTGGAAATGAATGAACATATTGTTTATGACGTTTCTCAAA
TTAGAATGAGATATTTAGTNAAGTTTCAAATTAAAAAAANATTAAAAATTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
ETPWKTETTTTTTTPNGATTTTTTTTTTTTTASTSTTASANILPQVAAPLNRGRISRAQH
SNAAIQEPKIPHYKQPMKVEYKVEKINVCKVGLFYHVVSNNWQGVAYIMLDSGLDNFSAL
HDAFKADKYQLALTLLSKCRSAAELSPLSPESKQNLFHFIGMYPSSVANWSARVQQKLLS
SGVSPNLTDSTGRTPLHYAAVSENV---

---LQNLDELETVSKILIAAHQNTTMHPYDYCFKALGASLEKLDANSPEFGILKKYSENT
GCTKKIVNIFKLQRKGEVERFQAHKNLKNHFLLWHGSLTTNYLSILSQGLKIAPPEAPVT
GYMFGKGIYFSDMFRKSINYCGSWDSSSANSFLLLSEVALGTMKEFKSAHYMESPETGTN
STKGVGKTGPNFDDSIILNNGVAIPLSPPEQVKGDTSDYHLEMNEHIVYDVSQIRMRYLV
KFQIKKXLKIKK


Translated Amino Acid sequence (All Frames)
Frame A:
lklhgklkqqqqqqlqmvppppplllplplpllvlqqqhqqiyflklqlh*ievelveln
iqmlpfknlkfhiinnq*ksniklkrlmfvrlvysimlyqiigkvlpilcwtlv*iisvh
fmmhsklininwl*lyyqnvvqllnyhhyhqnqnktfsislvcthhllpigvlvfnknyy
hlvfhqisliplvelhftmqlslkmf---

---LQNLDELETVSKILIAAHQNTTMHPYDYCFKALGASLEKLDANSPEFGILKKYSENT
GCTKKIVNIFKLQRKGEVERFQAHKNLKNHFLLWHGSLTTNYLSILSQGLKIAPPEAPVT
GYMFGKGIYFSDMFRKSINYCGSWDSSSANSFLLLSEVALGTMKEFKSAHYMESPETGTN
STKGVGKTGPNFDDSIILNNGVAIPLSPPEQVKGDTSDYHLEMNEHIVYDVSQIRMRYLV
KFQIKKXLKIKK

Frame B:
*nsmen*nnnnnnnskwchhhhhyyyhyhyhc*yfnnsiskytssscssik*r*n**sst
fkcchsrt*nstl*ttnesri*s*kd*cl*gwfilsccik*larcclyyvglwfr*fqct
s*ciqs**isigsnfiikmsfsc*iitiitriktkpfpfhwyvpiiccqlecscstkiii
iwcftksh*fhw*nstslcscl*kcs---

---yktwmnlrpfqrf*lpltkipqcihtiivskllvplwrnwmptlqnlvslkstprip
vaqrrl*ifsnskekerlkdsklikisriisyygmvv*qqtispfylka*rllhqrlqsl
viclvkvfisliclenl*tiavvgivlqqivssysqr*lwvq*knlkaltiwnplklvqi
vlkv*vklvqtltivsf*imvlqflsllqnklkvilpiitwk*mnilfmtflkle*di*x
sfklkkx*klk

Frame C:
ETPWKTETTTTTTTPNGATTTTTTTTTTTTTASTSTTASANILPQVAAPLNRGRISRAQH
SNAAIQEPKIPHYKQPMKVEYKVEKINVCKVGLFYHVVSNNWQGVAYIMLDSGLDNFSAL
HDAFKADKYQLALTLLSKCRSAAELSPLSPESKQNLFHFIGMYPSSVANWSARVQQKLLS
SGVSPNLTDSTGRTPLHYAAVSENV---

---tklg*t*drfkdfdcrspkyhnasirllfqsswclfgeigcqlsriwyp*kvlreyr
lhkedckyfqtpkkrrg*kipss*ksqesfptmaw*fnnklslhfisrlkdcstrgsshw
lyvw*rylfl*yv*kiykllr*lg*ffsk*fpltlrgsfgyneri*krslygip*nwyk*
y*rcr*nwskl*r*yhfk*wccnsslssrts*r*yfrlslgne*tycl*rfsn*neifsx
vsn*kxikn*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD538 (SHD538Q) /CSM/SH/SHD5-B/SHD538Q.Seq.d/ 2416 0.0
AHA138 (AHA138Q) /CSM/AH/AHA1-B/AHA138Q.Seq.d/ 1409 0.0
VFI522 (VFI522Q) /CSM/VF/VFI5-A/VFI522Q.Seq.d/ 1402 0.0
SHG115 (SHG115Q) /CSM/SH/SHG1-A/SHG115Q.Seq.d/ 1402 0.0
AHN647 (AHN647Q) /CSM/AH/AHN6-B/AHN647Q.Seq.d/ 1388 0.0
SLB163 (SLB163Q) /CSM/SL/SLB1-C/SLB163Q.Seq.d/ 1219 0.0
AFD220 (AFD220Q) /CSM/AF/AFD2-A/AFD220Q.Seq.d/ 1138 0.0
VHF647 (VHF647Q) /CSM/VH/VHF6-B/VHF647Q.Seq.d/ 1116 0.0
VHD729 (VHD729Q) /CSM/VH/VHD7-B/VHD729Q.Seq.d/ 1108 0.0
SSM827 (SSM827Q) /CSM/SS/SSM8-B/SSM827Q.Seq.d/ 1108 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ534950|AJ534950.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-3 (adprt-3 gene). 1400 0.0 1
CX590527|CX590527.1 TTE00031180 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-09 1
CX587668|CX587668.1 TTE00026641 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-09 1
CX587195|CX587195.1 TTE00021029 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-09 1
CX585596|CX585596.1 TTE00021875 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-09 1
DV613566|0 70 1e-07 1
DV316421|DV316421.1 NABOI60TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOI60, mRNA sequence. 58 5e-04 1
DV316420|DV316420.1 NABOI60T1O Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOI60, mRNA sequence. 58 5e-04 1
DV298771|DV298771.1 NABPS65TR Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABPS65, mRNA sequence. 58 5e-04 1
DV298769|DV298769.1 NABPS65TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABPS65, mRNA sequence. 58 5e-04 1
dna update 2006. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ534950_1(AJ534950|pid:none) Dictyostelium discoideum mRNA for ... 484 e-135
AK166104_1(AK166104|pid:none) Mus musculus lung RCB-0558 LLC cDN... 196 1e-48
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl... 196 2e-48
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA... 196 2e-48
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF... 196 2e-48
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym... 196 2e-48
M18112_1(M18112|pid:none) Human poly(ADP-ribose) polymerase mRNA... 196 2e-48
DQ891636_1(DQ891636|pid:none) Synthetic construct clone IMAGE:10... 195 3e-48
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 195 3e-48
AK159433_1(AK159433|pid:none) Mus musculus osteoclast-like cell ... 195 3e-48
protein update 2009. 4.16
PSORT

psg: 0.75 gvh: 0.43 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.56 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: mitochondrial
16.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for SHD538 is mit

5' end seq. ID SHD538F
5' end seq.
>SHD538F.Seq
CTGAAACTCCATGGAAAACTGAAACAACAACAACAACAACAACTCCAAATGGTGCCACCA
CCACCACCACTACTACTACCACTACCACTACCACTGCTAGTACTTCAACAACAGCATCAG
CAAATATACTTCCTCAAGTTGCAGCTCCATTAAATAGAGGTAGAATTAGTAGAGCTCAAC
ATTCAAATGCTGCCATTCAAGAACCTAAAATTCCACATTATAAACAACCAATGAAAGTCG
AATATAAAGTTGAAAAGATTAATGTTTGTAAGGTTGGTTTATTCTATCATGTTGTATCAA
ATAATTGGCAAGGTGTTGCCTATATTATGTTGGACTCTGGTTTAGATAATTTCAGTGCAC
TTCATGATGCATTCAAAGCTGATAAATATCAATTGGCTCTAACTTTATTATCAAAATGTC
GTTCAGCTGCTGAATTATCACCATTATCACCAGAATCAAAACAAAACCTTTTCCATTTCA
TTGGTATGTACCCATCATCTGTTGCCAATTGGAGTGCTCGTGTTCAACAAAAATTATTAT
CATCTGGTGTTTCACCAAATCTCACTGATTCCACTGGTAGAACTCCACTTCACTATGCAG
CTGTCTCTGAAAATGTTCCNNNNNNNNNN
Length of 5' end seq. 629
3' end seq. ID SHD538Z
3' end seq.
>SHD538Z.Seq
NNNNNNNNNNTTACAAAACTTGGATGAACTTGAGACCGTTTCAAAGATTTTGATTGCCGC
TCACCAAAATACCACAATGCATCCATACGATTATTGTTTCAAAGCTCTTGGTGCCTCTTT
GGAGAAATTGGATGCCAACTCTCCAGAATTTGGTATCCTTAAAAAGTACTCCGAGAATAC
CGGTTGCACAAAGAAGATTGTAAATATTTTCAAACTCCAAAGAAAAGGAGAGGTTGAAAG
ATTCCAAGCTCATAAAAATCTCAAGAATCATTTCCTACTATGGCATGGTAGTTTAACAAC
AAACTATCTCTCCATTTTATCTCAAGGCTTAAAGATTGCTCCACCAGAGGCTCCAGTCAC
TGGTTATATGTTTGGTAAAGGTATTTATTTCTCTGATATGTTTAGAAAATCTATAAACTA
TTGCGGTAGTTGGGATAGTTCTTCAGCAAATAGTTTCCTCTTACTCTCAGAGGTAGCTTT
GGGTACAATGAAAGAATTTAAAAGCGCTCACTATATGGAATCCCCTGAAACTGGTACAAA
TAGTACTAAAGGTGTAGGTAAAACTGGTCCAAACTTTGACGATAGTATCATTTTAAATAA
TGGTGTTGCAATTCCTCTCTCTCCTCCAGAACAAGTTAAAGGTGATACTTCCGATTATCA
CTTGGAAATGAATGAACATATTGTTTATGACGTTTCTCAAATTAGAATGAGATATTTAGT
NAAGTTTCAAATTAAAAAAANATTAAAAATTAAAAAA
Length of 3' end seq. 757
Connected seq. ID SHD538P
Connected seq.
>SHD538P.Seq
CTGAAACTCCATGGAAAACTGAAACAACAACAACAACAACAACTCCAAATGGTGCCACCA
CCACCACCACTACTACTACCACTACCACTACCACTGCTAGTACTTCAACAACAGCATCAG
CAAATATACTTCCTCAAGTTGCAGCTCCATTAAATAGAGGTAGAATTAGTAGAGCTCAAC
ATTCAAATGCTGCCATTCAAGAACCTAAAATTCCACATTATAAACAACCAATGAAAGTCG
AATATAAAGTTGAAAAGATTAATGTTTGTAAGGTTGGTTTATTCTATCATGTTGTATCAA
ATAATTGGCAAGGTGTTGCCTATATTATGTTGGACTCTGGTTTAGATAATTTCAGTGCAC
TTCATGATGCATTCAAAGCTGATAAATATCAATTGGCTCTAACTTTATTATCAAAATGTC
GTTCAGCTGCTGAATTATCACCATTATCACCAGAATCAAAACAAAACCTTTTCCATTTCA
TTGGTATGTACCCATCATCTGTTGCCAATTGGAGTGCTCGTGTTCAACAAAAATTATTAT
CATCTGGTGTTTCACCAAATCTCACTGATTCCACTGGTAGAACTCCACTTCACTATGCAG
CTGTCTCTGAAAATGTTCC----------TTACAAAACTTGGATGAACTTGAGACCGTTT
CAAAGATTTTGATTGCCGCTCACCAAAATACCACAATGCATCCATACGATTATTGTTTCA
AAGCTCTTGGTGCCTCTTTGGAGAAATTGGATGCCAACTCTCCAGAATTTGGTATCCTTA
AAAAGTACTCCGAGAATACCGGTTGCACAAAGAAGATTGTAAATATTTTCAAACTCCAAA
GAAAAGGAGAGGTTGAAAGATTCCAAGCTCATAAAAATCTCAAGAATCATTTCCTACTAT
GGCATGGTAGTTTAACAACAAACTATCTCTCCATTTTATCTCAAGGCTTAAAGATTGCTC
CACCAGAGGCTCCAGTCACTGGTTATATGTTTGGTAAAGGTATTTATTTCTCTGATATGT
TTAGAAAATCTATAAACTATTGCGGTAGTTGGGATAGTTCTTCAGCAAATAGTTTCCTCT
TACTCTCAGAGGTAGCTTTGGGTACAATGAAAGAATTTAAAAGCGCTCACTATATGGAAT
CCCCTGAAACTGGTACAAATAGTACTAAAGGTGTAGGTAAAACTGGTCCAAACTTTGACG
ATAGTATCATTTTAAATAATGGTGTTGCAATTCCTCTCTCTCCTCCAGAACAAGTTAAAG
GTGATACTTCCGATTATCACTTGGAAATGAATGAACATATTGTTTATGACGTTTCTCAAA
TTAGAATGAGATATTTAGTNAAGTTTCAAATTAAAAAAANATTAAAAATTAAAAAA
Length of connected seq. 1366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -