SHD524
Library SH
(Link to library)
Clone ID SHD524
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10784-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHD524 (SHD524Q) /CSM/SH/SHD5-A/SHD524Q.Seq.d/
XXXXXXXXXXCCAAATACAACATTAACATATTTTGAACCAAGAATCACAGTTATTCCAAC
AGTTAAAAATAANAAANATGGTATTTCAATAAGAGTGGGTGGTGTTAGTTTATCAGGNAT
TATAAATGCNAGTTTAGGAATTTCATCAGANAATGTTTCTCTTTCATGTGATNTACAATG
TAGTTTATCTCCCAATGAAACATTTTATTTAAGTAATCCAATAGTAAGTTCAAATGAAAA
AGATATAACAAATAGTACTGATTGTTCTATCATGTCATTCAATGAATTCAACCTGTTGNT
GANGAAACATCAGGAGTATTATATCTCCAATTNGGCCCAGACATCATATCANNATGATGT
TAAAATCGAAGAAATTCAATCATCATTAAATCCATCATCATCANATGGTGGTGAAAGNAA
ATCATCAAAACTATCAGGTGGTGCNATNGATGGTATTNCAANTGGTTGTGCTGNNGGTGN
TGGTGNNTTAGTTGGTTCNGTCNCNTATTNTAAANTAATCACTCGTGTTAAAAAAGCATT
CNATTNATATTTNAATNATAGTATTTGATGGTGTAAATTNCNAATTGGGATCCAAANTAC
AGTAGATCATACACACATTCAAGTGANNAACTTTGATTACACTGGANAATATTAATTNAA
TGTATTATAAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---NTTLTYFEPRITVIPTVKNXKXGISIRVGGVSLSGIINASLGISSXNVSLSCDXQCS
LSPNETFYLSNPIVSSNEKDITNSTDCSIMSFNEFNLLXXKHQEYYISNXAQTSYXXDVK
IEEIQSSLNPSSSXGGEXKSSKLSGGAXDGIXXGCAXGXGXLVGSVXYXKXITRVKKAFX
XYXNXSI*wckxxigiqxtvdhthiqvxnfdytgxy*xnvl*k


Translated Amino Acid sequence (All Frames)
Frame A:
---qiqh*hilnqesqlfqqlkixxmvfq*ewvvlvyqxl*mxv*efhqxmflfhvxynv
vylpmkhfi*viq**vqmkki*qivlivlschsmnstcx*xnirsiispixprhhixmml
kskkfnhh*ihhhxmvvkxnhqnyqvvxxmvxqxvvlxvxvx*lvxsxixx*slvlkkhs
ixixxivfdgvnxxlgskxq*iihtfk*xtlitlxninxmyykk


Frame B:
---kyninif*tknhsysns*k*xxwyfnksgwc*firxykcxfrnfirxcfsfm*xtm*
fisq*nilfk*snskfk*krynk*y*lfyhviq*iqpvxxetsgvlylqxgpdiisx*c*
nrrnsiiiksiiixww*kxiiktirwcxxwyxxwlcxxxwxxswfxxxx*xnhsc*ksix
xifxx*ylmv*ixnwdpxysrsythssxxl*lhwxilixciik


Frame C:
---NTTLTYFEPRITVIPTVKNXKXGISIRVGGVSLSGIINASLGISSXNVSLSCDXQCS
LSPNETFYLSNPIVSSNEKDITNSTDCSIMSFNEFNLLXXKHQEYYISNXAQTSYXXDVK
IEEIQSSLNPSSSXGGEXKSSKLSGGAXDGIXXGCAXGXGXLVGSVXYXKXITRVKKAFX
XYXNXSI*wckxxigiqxtvdhthiqvxnfdytgxy*xnvl*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD524 (SHD524Q) /CSM/SH/SHD5-A/SHD524Q.Seq.d/ 1090 0.0
SHG880 (SHG880Q) /CSM/SH/SHG8-D/SHG880Q.Seq.d/ 979 0.0
SHA715 (SHA715Q) /CSM/SH/SHA7-A/SHA715Q.Seq.d/ 979 0.0
CHL453 (CHL453Q) /CSM/CH/CHL4-C/CHL453Q.Seq.d/ 979 0.0
CHF790 (CHF790Q) /CSM/CH/CHF7-D/CHF790Q.Seq.d/ 979 0.0
SHF654 (SHF654Q) /CSM/SH/SHF6-C/SHF654Q.Seq.d/ 973 0.0
CHQ418 (CHQ418Q) /CSM/CH/CHQ4-A/CHQ418Q.Seq.d/ 973 0.0
SHC671 (SHC671Q) /CSM/SH/SHC6-C/SHC671Q.Seq.d/ 971 0.0
SHL850 (SHL850Q) /CSM/SH/SHL8-C/SHL850Q.Seq.d/ 969 0.0
SHL846 (SHL846Q) /CSM/SH/SHL8-B/SHL846Q.Seq.d/ 969 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds. 456 0.0 4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 92 2e-18 5
U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds. 60 3e-10 2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds. 60 4e-10 2
AF482962|AF482962.1 Dictyostelium discoideum ABC transporter AbcH.3 (abcH.3) gene, complete cds. 38 1e-04 5
DN305866|DN305866.1 PL05009B2B05 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 3', mRNA sequence. 48 0.25 1
DN297327|DN297327.1 PL04009A1C05 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 48 0.25 1
DN296025|DN296025.1 PL04003X1G07 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 48 0.25 1
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome. 36 0.45 2
U17896|U17896.1 Xiphophorus maculatus ERCC2/XPD gene, complete cds. 46 0.98 1
dna update 2006. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS... 213 3e-54
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS... 213 3e-54
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS... 213 3e-54
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS... 213 3e-54
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS... 185 1e-45
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS... 182 1e-44
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS... 182 1e-44
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS... 182 1e-44
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS... 182 1e-44
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS... 182 1e-44
protein update 2009. 5.28
PSORT

psg: 0.80 gvh: 0.53 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for SHD524 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHD524Z
3' end seq.
>SHD524Z.Seq
NNNNNNNNNNCCAAATACAACATTAACATATTTTGAACCAAGAATCACAGTTATTCCAAC
AGTTAAAAATAANAAANATGGTATTTCAATAAGAGTGGGTGGTGTTAGTTTATCAGGNAT
TATAAATGCNAGTTTAGGAATTTCATCAGANAATGTTTCTCTTTCATGTGATNTACAATG
TAGTTTATCTCCCAATGAAACATTTTATTTAAGTAATCCAATAGTAAGTTCAAATGAAAA
AGATATAACAAATAGTACTGATTGTTCTATCATGTCATTCAATGAATTCAACCTGTTGNT
GANGAAACATCAGGAGTATTATATCTCCAATTNGGCCCAGACATCATATCANNATGATGT
TAAAATCGAAGAAATTCAATCATCATTAAATCCATCATCATCANATGGTGGTGAAAGNAA
ATCATCAAAACTATCAGGTGGTGCNATNGATGGTATTNCAANTGGTTGTGCTGNNGGTGN
TGGTGNNTTAGTTGGTTCNGTCNCNTATTNTAAANTAATCACTCGTGTTAAAAAAGCATT
CNATTNATATTTNAATNATAGTATTTGATGGTGTAAATTNCNAATTGGGATCCAAANTAC
AGTAGATCATACACACATTCAAGTGANNAACTTTGATTACACTGGANAATATTAATTNAA
TGTATTATAAAAAA
Length of 3' end seq. 674
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -