AFJ163
Library AF
(Link to library)
Clone ID AFJ163
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16584-1
Original site URL
Representative seq. ID AFJ163P
(Link to Original site)
Representative DNA sequence
>AFJ163 (AFJ163Q) /CSM/AF/AFJ1-C/AFJ163Q.Seq.d/
AAAAAAAATTCTAGTAAGGTATAAAAAAAAAATCATATAAAATGGTAGAAAAAATCATTG
TTTCAAATCCAGTTGCTAATCTTTTAGGTGATGAACAAACCAGAGTTATTTGGGATTTAA
TTGAAAAGAAATTAATTTTTCCATTTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAA
TTGAGTATCGTGATAAAACCAATGATCAAGTTACAATTGATGCAGCCAATGCAATTAAGA
GATTAAAAGTTGGTATTAAATGTGCAACAATTACACCAGACGAAGCACGTGTCACAGAGT
TTGGATTGAAGGAGATGTGGAAATCACCAAATGGTACCATTCGTAATACATTGGGTGGCA
CATTATTTAGAGAGCCAATTGTTTGTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATA
AATCTATAGTTATTGGTCGTCATGCATTTGGTGACCAATACAGAGCCACTGATTTCGTAG
TAAAGGGAGCTGGCAAGTTGGAGTTAACCTACACACCAGCCGACGGCAGTGCACCACAAA
AATTCCAAGTCTTTGACTTCCCATCCGAXXXXXXXXXXGATACGACGGCCGTTTCAAAGA
CATTTTCCAAGAGATCTACGAAAGAGAGTACAAAGTTAAATTCGACACTGCCGGTATTTG
GTATGAGCATAGACTCATCGACGACATGGTCGCCTATGCTATGAAGAGTGAGGGTGGCTT
CGTTTGGGCTTGTAAAAACTATGACGGTGATGTTCAATCAGATGCCGTCGCCCAGGGTTA
TGGTAGTTTGGGTCTCATGACTTCAGTTTTACTCTCTGCCGACTCTTTAGTTGCTGAAGC
CTCCCATGGTACTGTCACTAGACATTTCCGTGAACATCAAAAAGGTAGAGAAACCAGTAC
CAATTCAATCGCTTCTATCTTTGCTTGGACTCGTGGTCTTGAATATCGTGCTAAATTAGA
TAACAATGATAAATTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCTGT
TGAATCTGGTTTCATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAATGT
AAAACGTACAGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGT
TAGCAAATTAACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTAC
TACTCTACTTCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCA
TTTCTTTTTTTTAGTTCAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
kkf**GIKKKSYKMVEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGI
EYRDKTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGT
LFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQK
FQVFDFPS---

---YDGRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGD
VQSDAVAQGYGSLGLMTSVLLSADSLVAEASHGTVTRHFREHQKGRETSTNSIASIFAWT
RGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEE
YINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshffflvqn


Translated Amino Acid sequence (All Frames)
Frame A:
kknsskv*kknhikw*kkslfqiqllif*vmnkpelfgi*lkrn*ffhf*i*klkpmi*e
lsivikpmiklqlmqpmqlrd*klvlnvqqlhqtkhvsqsld*rrcgnhqmvpfvihwva
hylesqlfvrmshvwspvginl*llvvmhlvtnteplis**relasws*pthqptavhhk
nsksltshp---

---dttavsktfskrstkestklnstlpvfgmsidssttwspml*rvrvasfglvktmtv
mfnqmpsprvmvvwvs*lqfyslptl*llkppmvlsldisvnikkvekpvpiqsllsllg
lvvlnivln*itminy*nsvmllklpvsmllnlvs*lki*qfvlkvqlkm*nvqtt*ilk
nilirlpnyllan*lhckkfyksyslllplllyfiisccglsfiflhknlisff*fk

Frame B:
kkilvrykkkii*ngrknhcfkssc*sfr**tnqsylgfn*keinfsifrfks*nl*frn
*vs**nq*ssyn*csqcn*eikswy*mcnnytrrstchrvwiegdveitkwyhs*yigwh
ii*rancl*ecptfghlle*iysywssciw*piqsh*frskgswqvgvnlhtsrrqcttk
ipsl*lpir---

---irrpfqrhfprdlrkrvqs*irhcrylv*a*thrrhgrlcyee*gwlrlgl*kl*r*
csircrrpglw*fgshdfsftlcrlfsc*slpwych*tfp*tskr*rnqyqfnrfylcld
sws*isc*ir*q**iikilscs*sflyrcc*iwfhd*rfsnlc*rfs*kcktyrllky*r
iy**gcritc*qincivrnfinlthyyyhyystslfrvavyhsffsikisflffssk

Frame C:
kkf**GIKKKSYKMVEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGI
EYRDKTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGT
LFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQK
FQVFDFPS---

---YDGRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGD
VQSDAVAQGYGSLGLMTSVLLSADSLVAEASHGTVTRHFREHQKGRETSTNSIASIFAWT
RGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEE
YINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshffflvqn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ163 (AFJ163Q) /CSM/AF/AFJ1-C/AFJ163Q.Seq.d/ 2169 0.0
VFJ466 (VFJ466Q) /CSM/VF/VFJ4-C/VFJ466Q.Seq.d/ 1189 0.0
VFI567 (VFI567Q) /CSM/VF/VFI5-C/VFI567Q.Seq.d/ 1189 0.0
SFI370 (SFI370Q) /CSM/SF/SFI3-C/SFI370Q.Seq.d/ 1189 0.0
SFG677 (SFG677Q) /CSM/SF/SFG6-D/SFG677Q.Seq.d/ 1189 0.0
SFD390 (SFD390Q) /CSM/SF/SFD3-D/SFD390Q.Seq.d/ 1189 0.0
SFE851 (SFE851Q) /CSM/SF/SFE8-C/SFE851Q.Seq.d/ 1187 0.0
AFC669 (AFC669Q) /CSM/AF/AFC6-C/AFC669Q.Seq.d/ 1187 0.0
VFK756 (VFK756Q) /CSM/VF/VFK7-C/VFK756Q.Seq.d/ 1176 0.0
VFE242 (VFE242Q) /CSM/VF/VFE2-B/VFE242Q.Seq.d/ 1176 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 989 0.0 13
CR541695|CR541695.1 Homo sapiens full open reading frame cDNA clone RZPDo834G0228D for gene IDH1, isocitrate dehydrogenase 1 (NADP+), soluble; complete cds, without stopcodon. 62 6e-28 6
AU125408|AU125408.1 Homo sapiens cDNA clone:NT2RM4001543, 5' end, expressed in uninduced NT2 neuronal precursor cells. 62 1e-27 6
CR533522|CR533522.1 Homo sapiens full open reading frame cDNA clone RZPDo834C1219D for gene IDH1, isocitrate dehydrogenase 1 (NADP+), soluble; complete cds, incl. stopcodon. 62 1e-27 6
AF113917|AF113917.1 Homo sapiens NADP+-dependent isocitrate dehydrogenase (PICD) mRNA, complete cds. 62 1e-26 6
CR608733|CR608733.1 full-length cDNA clone CS0DK007YJ06 of HeLa cells Cot 25-normalized of Homo sapiens (human). 62 1e-26 6
BC012846|BC012846.1 Homo sapiens, clone MGC:21176 IMAGE:3880331, mRNA, complete cds. 62 1e-26 6
CQ715092|CQ715092.1 Sequence 1026 from Patent WO02068579. 62 1e-26 6
AL136702|AL136702.1 Homo sapiens mRNA; cDNA DKFZp566J151 (from clone DKFZp566J151); complete cds. 62 1e-26 6
AF020038|AF020038.1 Homo sapiens NADP-dependent isocitrate dehydrogenase (IDH) mRNA, complete cds. 62 1e-26 6
dna update 2004. 9.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY040207_2(AY040207|pid:none) Aspergillus nidulans C1 tetrahydro... 239 e-125
AE016814_165(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 227 e-116
(Q75JR3) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm... 384 e-105
(Q75JR2) RecName: Full=Isocitrate dehydrogenase [NADP], mitochon... 295 2e-78
EF085570_1(EF085570|pid:none) Picea sitchensis clone WS02811_B16... 286 1e-75
DQ311191_1(DQ311191|pid:none) Bombyx mori isocitrate dehydrogena... 286 1e-75
DQ440329_1(DQ440329|pid:none) Aedes aegypti clone AET-426 NADP-d... 280 6e-74
DQ886272_1(DQ886272|pid:none) Gryllus firmus isocitrate dehydrog... 280 7e-74
AE014296_1520(AE014296|pid:none) Drosophila melanogaster chromos... 279 2e-73
BC153921_1(BC153921|pid:none) Danio rerio isocitrate dehydrogena... 279 2e-73
protein update 2009. 4.23
PSORT

psg: 0.74 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: cytoskeletal

>> prediction for AFJ163 is cyt

5' end seq. ID AFJ163F
5' end seq.
>AFJ163F.Seq
AAAAAAAATTCTAGTAAGGTATAAAAAAAAAATCATATAAAATGGTAGAAAAAATCATTG
TTTCAAATCCAGTTGCTAATCTTTTAGGTGATGAACAAACCAGAGTTATTTGGGATTTAA
TTGAAAAGAAATTAATTTTTCCATTTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAA
TTGAGTATCGTGATAAAACCAATGATCAAGTTACAATTGATGCAGCCAATGCAATTAAGA
GATTAAAAGTTGGTATTAAATGTGCAACAATTACACCAGACGAAGCACGTGTCACAGAGT
TTGGATTGAAGGAGATGTGGAAATCACCAAATGGTACCATTCGTAATACATTGGGTGGCA
CATTATTTAGAGAGCCAATTGTTTGTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATA
AATCTATAGTTATTGGTCGTCATGCATTTGGTGACCAATACAGAGCCACTGATTTCGTAG
TAAAGGGAGCTGGCAAGTTGGAGTTAACCTACACACCAGCCGACGGCAGTGCACCACAAA
AATTCCAAGTCTTTGACTTCCCATCCGA----------
Length of 5' end seq. 568
3' end seq. ID AFJ163Z
3' end seq.
>AFJ163Z.Seq
----------GATACGACGGCCGTTTCAAAGACATTTTCCAAGAGATCTACGAAAGAGAG
TACAAAGTTAAATTCGACACTGCCGGTATTTGGTATGAGCATAGACTCATCGACGACATG
GTCGCCTATGCTATGAAGAGTGAGGGTGGCTTCGTTTGGGCTTGTAAAAACTATGACGGT
GATGTTCAATCAGATGCCGTCGCCCAGGGTTATGGTAGTTTGGGTCTCATGACTTCAGTT
TTACTCTCTGCCGACTCTTTAGTTGCTGAAGCCTCCCATGGTACTGTCACTAGACATTTC
CGTGAACATCAAAAAGGTAGAGAAACCAGTACCAATTCAATCGCTTCTATCTTTGCTTGG
ACTCGTGGTCTTGAATATCGTGCTAAATTAGATAACAATGATAAATTATTAAAATTCTGT
CATGCTCTTGAAGCTTCCTGTATCGATGCTGTTGAATCTGGTTTCATGACTAAAGATTTA
GCAATTTGTGTTAAAGGTTCAGTTGAAAATGTAAAACGTACAGACTACTTAAATACTGAA
GAATATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATTAACTGCATTGTAAGAAATT
TTATAAATCTTACTCACTACTACTACCACTACTACTCTACTTCATTATTTCGTGTTGCGG
TCTATCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTTTTTAGTTCAAAAT
Length of 3' end seq. 704
Connected seq. ID AFJ163P
Connected seq.
>AFJ163P.Seq
AAAAAAAATTCTAGTAAGGTATAAAAAAAAAATCATATAAAATGGTAGAAAAAATCATTG
TTTCAAATCCAGTTGCTAATCTTTTAGGTGATGAACAAACCAGAGTTATTTGGGATTTAA
TTGAAAAGAAATTAATTTTTCCATTTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAA
TTGAGTATCGTGATAAAACCAATGATCAAGTTACAATTGATGCAGCCAATGCAATTAAGA
GATTAAAAGTTGGTATTAAATGTGCAACAATTACACCAGACGAAGCACGTGTCACAGAGT
TTGGATTGAAGGAGATGTGGAAATCACCAAATGGTACCATTCGTAATACATTGGGTGGCA
CATTATTTAGAGAGCCAATTGTTTGTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATA
AATCTATAGTTATTGGTCGTCATGCATTTGGTGACCAATACAGAGCCACTGATTTCGTAG
TAAAGGGAGCTGGCAAGTTGGAGTTAACCTACACACCAGCCGACGGCAGTGCACCACAAA
AATTCCAAGTCTTTGACTTCCCATCCGA----------GATACGACGGCCGTTTCAAAGA
CATTTTCCAAGAGATCTACGAAAGAGAGTACAAAGTTAAATTCGACACTGCCGGTATTTG
GTATGAGCATAGACTCATCGACGACATGGTCGCCTATGCTATGAAGAGTGAGGGTGGCTT
CGTTTGGGCTTGTAAAAACTATGACGGTGATGTTCAATCAGATGCCGTCGCCCAGGGTTA
TGGTAGTTTGGGTCTCATGACTTCAGTTTTACTCTCTGCCGACTCTTTAGTTGCTGAAGC
CTCCCATGGTACTGTCACTAGACATTTCCGTGAACATCAAAAAGGTAGAGAAACCAGTAC
CAATTCAATCGCTTCTATCTTTGCTTGGACTCGTGGTCTTGAATATCGTGCTAAATTAGA
TAACAATGATAAATTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCTGT
TGAATCTGGTTTCATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAATGT
AAAACGTACAGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGT
TAGCAAATTAACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTAC
TACTCTACTTCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCA
TTTCTTTTTTTTAGTTCAAAAT
Length of connected seq. 1272
Full length Seq ID -
Full length Seq. -
Length of full length seq. -