SHD492
Library SH
(Link to library)
Clone ID SHD492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHD492P
(Link to Original site)
Representative DNA sequence
>SHD492 (SHD492Q) /CSM/SH/SHD4-D/SHD492Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATT
TGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCAC
CTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTA
CCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAG
ATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAG
ATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAG
AAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAAC
AACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTA
AAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGA
ACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGG
CTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTC
CTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAAC
AAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAAT
AATTTAATCATTNCTTNCTTTTAAGAAACT
sequence update 2002.10.25
Translated Amino Acid sequence
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---XQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENN
EITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE
NEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQ
QENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ
EQQDKLNQEKNQQLLEQEQNQK*fnhxxllrn


Translated Amino Acid sequence (All Frames)
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---xsrs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k*
*nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*r
e*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketkns
trercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnp
rttr*iksrkkstiirtrtkskii*sxlxfkk

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---XQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENN
EITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE
NEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQ
QENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ
EQQDKLNQEKNQQLLEQEQNQK*fnhxxllrn

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---fkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkim
klpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkr
mkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfn
krtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksk
nnkin*ikkkinny*nknkiknnliixxf*et

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/ 805 0.0
SHJ524 (SHJ524Q) /CSM/SH/SHJ5-A/SHJ524Q.Seq.d/ 805 0.0
SHG406 (SHG406Q) /CSM/SH/SHG4-A/SHG406Q.Seq.d/ 805 0.0
SHG232 (SHG232Q) /CSM/SH/SHG2-B/SHG232Q.Seq.d/ 805 0.0
SHD878 (SHD878Q) /CSM/SH/SHD8-D/SHD878Q.Seq.d/ 805 0.0
SHD613 (SHD613Q) /CSM/SH/SHD6-A/SHD613Q.Seq.d/ 805 0.0
SHD492 (SHD492Q) /CSM/SH/SHD4-D/SHD492Q.Seq.d/ 805 0.0
SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/ 805 0.0
SHD269 (SHD269Q) /CSM/SH/SHD2-C/SHD269Q.Seq.d/ 805 0.0
SHD221 (SHD221Q) /CSM/SH/SHD2-A/SHD221Q.Seq.d/ 805 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 805 0.0 5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 5e-25 1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 2e-04 9
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 36 0.004 11
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.009 8
AX344618|AX344618.1 Sequence 43 from Patent WO0200927. 42 0.019 4
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.022 2
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 34 0.035 9
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 36 0.037 10
AL356122|AL356122.9 Human DNA sequence from clone RP11-61P22 on chromosome 6. 40 0.11 6
dna update 2006. 2. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 308 2e-82
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 39 0.24
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 39 0.24
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 38 0.40
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 38 0.52
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 38 0.52
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.69
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 0.89
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 37 1.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 36 1.5
protein update 2009. 4.16
PSORT

psg: 0.40 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SHD492 is nuc

5' end seq. ID SHD492F
5' end seq.
>SHD492F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID SHD492Z
3' end seq.
>SHD492Z.Seq
NNNNNNNNNNTNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCC
AAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAA
ATCAAAAATAATTTAATCATTNCTTNCTTTTAAGAAACT
Length of 3' end seq. 819
Connected seq. ID SHD492P
Connected seq.
>SHD492P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATT
TGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCAC
CTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTA
CCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAG
ATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAG
ATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAG
AAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAAC
AACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTA
AAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGA
ACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGG
CTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTC
CTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAAC
AAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAAT
AATTTAATCATTNCTTNCTTTTAAGAAACT
Length of connected seq. 920
Full length Seq ID -
Full length Seq. -
Length of full length seq. -