>SHD353 (SHD353Q) /CSM/SH/SHD3-C/SHD353Q.Seq.d/
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACAC
AAAATACTGCTTTAXXXXXXXXXXTAGATCATTTTAGACTTTTAATCACTCATATTGGTA
ATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTA
TCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATG
CCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTT
CAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAG
AGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGG
CCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAG
CAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATA
TCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTC
AATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCA
AAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAT

*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---

---DHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPET
IQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYID
HMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCET
DQKRMLAEANAKGIKEDQNHLAIKKIQNFQQEY

Frame A:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhkill---

---*iildf*slilvmlwvildwsdpvvytivvmlsnsyqt*krfqnski*pqkmpshlk
qfklvpiwiqsfiifqiiyqrvlntlrcw*tfslqsfeislini*risissylpwpqits
ii*sivkinslrnqkqsvlklyyslmmalqlvwlis*ny*ikikisilfigsivfn*nvk
likrecwlkqmqkvskrikii*qlkrfkisnkn

Frame B:
ikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledr
rsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkr
nsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicid
lsitkeytytil*ecsftscllfnd*yifsinkfr*ynytkycf---

---rsf*tfnhsyw*cygly*igqirwftll**cyqirtrlekdskiprfnlkrcplt*n
nss*yqfgfnhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklhr
sydq**r*tl*eiksnrc*sfiih**wlcnwfglylkiirsk*rfrfsslvrsysiem*n
*skenvg*skckryqrgsksfsn*kdskfptri

Frame C:
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---

---DHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPET
IQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYID
HMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCET
DQKRMLAEANAKGIKEDQNHLAIKKIQNFQQEY

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD353 (SHD353Q) /CSM/SH/SHD3-C/SHD353Q.Seq.d/                       2549   0.0
VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/                       1336   0.0
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/                       1336   0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/                       1336   0.0
SHE452 (SHE452Q) /CSM/SH/SHE4-C/SHE452Q.Seq.d/                       1336   0.0
SHC138 (SHC138Q) /CSM/SH/SHC1-B/SHC138Q.Seq.d/                       1336   0.0
CHO318 (CHO318Q) /CSM/CH/CHO3-A/CHO318Q.Seq.d/                       1336   0.0
CHI453 (CHI453Q) /CSM/CH/CHI4-C/CHI453Q.Seq.d/                       1336   0.0
CHE540 (CHE540Q) /CSM/CH/CHE5-B/CHE540Q.Seq.d/                       1336   0.0
CHE530 (CHE530Q) /CSM/CH/CHE5-B/CHE530Q.Seq.d/                       1336   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescriptCanis familiaris cDNA clone CH3#002_C07 5', mRNA sequence.    38   6e-04  3
BY464171|BY464171.1 Mus musculus 15 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:K630150M24, 3' end partial sequence.    42   0.026  2
AC168241|AC168241.2 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces.    52   0.031  1
CR450713|CR450713.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.070  8
BB822673|BB822673.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830022O04, 3' end partial sequence.    32   0.091  4
DN287505|DN287505.1 1241755 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    34   0.11   3
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   0.12   18
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16.    50   0.12   1
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09.    50   0.12   1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.12   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               426   e-117
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   215   2e-54
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   215   2e-54
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   215   2e-54
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   213   9e-54
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      213   9e-54
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   213   9e-54
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   213   9e-54
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   168   3e-40
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...   154   5e-36

 psg: 0.79  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SHD353 is nuc

>SHD353F.Seq
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACAC
AAAATACTGCTTTANNNNNNNNNN

>SHD353Z.Seq
NNNNNNNNNNTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTAT
ATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCA
GACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAA
ACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCA
GAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATC
GCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATC
GATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAA
GCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTA
GATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAA
ACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAAT
CATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAT

>SHD353P.Seq
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACAC
AAAATACTGCTTTA----------TAGATCATTTTAGACTTTTAATCACTCATATTGGTA
ATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTA
TCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATG
CCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTT
CAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAG
AGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGG
CCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAG
CAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATA
TCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTC
AATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCA
AAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAT