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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD293
Library SH
(Link to library)
Clone ID SHD293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11097-1
Original site URL
Representative seq. ID SHD293P
(Link to Original site)
Representative DNA sequence 
>SHD293 (SHD293Q) /CSM/SH/SHD2-D/SHD293Q.Seq.d/
ATTTTTTATTTTTCTATTTTAATAAAATTTATAATAATAATATTTATTTATTTTTTTATT
TTTCTATTTTAGTAAAATAAAAACAATAATAAACAAAAATGACATCTGGTAATGTAATGT
TAAAACATCAAGATGTTACAATTGAAAGAATTGAAAAATTTCTTAGTGATACCTATTTCG
TAAGAGAAAACCTTTATGGAAAATTAATTTCTTTAAAATCATCAGAAGCTGTAAAAGTTA
AAGTATCTCCAAAAGTTGAAGGAATTTCTTATAAAGATGCAATTCAACTTGAATATAAAG
ATACAAAGATTGGAGAATCATTTGGACCATCATGGACAAATTATTGGTTTAAAGTTACAA
TTGACGTACCAACTGATTGGAAAGATAAAACTATTCATTTCATTTGGAATTCATCTTGTG
AAGGTTTAATTTGGATGAATGGTATTGCAATTCAAGGTTTAATTGGTGGAACATGGCAAG
ATTTAAGAGAAGAATATAAATTAATTGAAAATTCAAAAGGTGGAGAACATTTTGAATTTT
ATATTGAAATTTCATGTAATGGTATGTTTGGAGTTGGTXXXXXXXXXXGTTTATCATTAC
TAAGATCNCCAAAATCNCCCGATGATACTTGTGANANGGGTTTTCATAAATTCNCCTACT
CAATTTATCCACATNGTGGTTCACTTCAATTTGCCTCCGTCATTAAANAAGGNTATTCAT
TAAATAATAACTTTTANATCAGTGAAACNCCATTTTNTTTAGNTTTTACAACTCANATCG
ATAAAACTTTTATTTCAACAAATAAANAAGCCATCATTGNTGANACAATTAAAAAAGCTG
AANATGGCNCCTCTTTTGTTGNGNGNGNTTANGAATNTTTTGGTGGNGCCNCTACTTTTA
ACTTTACATNTTCAATCCTTCCAATTCCATTCAAATCAATCATTGAANGTAANGGTNTTG
AANAAGTTAATCAATTTTCAAAATTTTATAAATTTAATGATACAATTAAAATTAATCCNT
TTGAAATCAAAACTTTTANATTTATTTCAAATTAAAAATTAAAAATAAAATTAATAAATA
AATATAAAAATAAATTTTAACNATAATAATAATAATAGTTTTTTCAAAACAAAAAAAAAA
AGAAATAATAAAATAAAATTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
flffyfnkiynnniylffyfsilvk*kq**TKMTSGNVMLKHQDVTIERIEKFLSDTYFV
RENLYGKLISLKSSEAVKVKVSPKVEGISYKDAIQLEYKDTKIGESFGPSWTNYWFKVTI
DVPTDWKDKTIHFIWNSSCEGLIWMNGIAIQGLIGGTWQDLREEYKLIENSKGGEHFEFY
IEISCNGMFGVG---

---LSLLRSPKSPDDTCXXGFHKFXYSIYPHXGSLQFASVIKXGYSLNNNFXISETPFXL
XFTTXIDKTFISTNKXAIIXXTIKKAEXGXSFVXXXXEXFGGAXTFNFTXSILPIPFKSI
IEXXGXEXVNQFSKFYKFNDTIKINPFEIKTFXFISN*klkiklinkyknkf*x*****f
fqnkkkkk**nki
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyfsilikfiiiifiyffiflf**nknnnkqk*hlvm*c*nikmlqlkelknflvipis
*ektfmen*fl*nhqkl*klkylqklkeflikmqfnlnikiqrlenhldhhgqiiglklq
ltyqligkiklfisfgihlvkv*fg*mvlqfkv*lvehgki*eknin*lkiqkvenilnf
ilkfhvmvclel---

---vyhy*dxqnxpmilvxxvfinsptqfihxvvhfnlppslxkxih*iitfxsvkxhfx
*xlqlxsikllfqqixkpslxxqlkklxmaplllxxxxnxlvxpllltlhxqsfqfhsnq
slxvxvlxklinfqnfinlmiqlklixlkskllxlfqikn*k*n**inikinfnxnnnns
ffktkkkrnnkikf

Frame B:
ffiflf**nl***ylfiflffyfskiktiinkndiw*cnvktsrcyn*kn*kis**ylfr
krkplwkinffkiirscks*sisks*rnfl*rcnst*i*rykdwriiwtimdkllv*syn
*rtn*ler*nysfhlefil*rfnldewycnsrfnwwnmarfkrri*in*kfkrwrtf*il
y*nfm*wyvwsw---

---fiitkixkixr*yl*xgfs*ixllnlstxwftsiclrh*xrxfik**llxq*nxixf
xfynsxr*nfyfnk*xshhx*xn*ks*xwxlfcxxxlxxfwwxxyf*lyxfnpsnsiqin
h*x*xx*xs*sifkil*i**yn*n*sx*nqnfxiyfklkiknkink*i*k*iltiiiiiv
fskqkkkeiik*nl

Frame C:
flffyfnkiynnniylffyfsilvk*kq**TKMTSGNVMLKHQDVTIERIEKFLSDTYFV
RENLYGKLISLKSSEAVKVKVSPKVEGISYKDAIQLEYKDTKIGESFGPSWTNYWFKVTI
DVPTDWKDKTIHFIWNSSCEGLIWMNGIAIQGLIGGTWQDLREEYKLIENSKGGEHFEFY
IEISCNGMFGVG---

---LSLLRSPKSPDDTCXXGFHKFXYSIYPHXGSLQFASVIKXGYSLNNNFXISETPFXL
XFTTXIDKTFISTNKXAIIXXTIKKAEXGXSFVXXXXEXFGGAXTFNFTXSILPIPFKSI
IEXXGXEXVNQFSKFYKFNDTIKINPFEIKTFXFISN*klkiklinkyknkf*x*****f
fqnkkkkk**nki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD293 (SHD293Q) /CSM/SH/SHD2-D/SHD293Q.Seq.d/                       1626   0.0
SHF566 (SHF566Q) /CSM/SH/SHF5-C/SHF566Q.Seq.d/                        950   0.0
CHQ611 (CHQ611Q) /CSM/CH/CHQ6-A/CHQ611Q.Seq.d/                        950   0.0
AHL346 (AHL346Q) /CSM/AH/AHL3-B/AHL346Q.Seq.d/                        950   0.0
AHK633 (AHK633Q) /CSM/AH/AHK6-B/AHK633Q.Seq.d/                        950   0.0
AHI766 (AHI766Q) /CSM/AH/AHI7-C/AHI766Q.Seq.d/                        950   0.0
SHF554 (SHF554Q) /CSM/SH/SHF5-C/SHF554Q.Seq.d/                        942   0.0
SHF873 (SHF873Q) /CSM/SH/SHF8-D/SHF873Q.Seq.d/                        918   0.0
CHF576 (CHF576Q) /CSM/CH/CHF5-D/CHF576Q.Seq.d/                        827   0.0
AHC780 (AHC780Q) /CSM/AH/AHC7-D/AHC780Q.Seq.d/                        823   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    42   0.091  18
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.094  7
BI678931|BI678931.1 SWS931 SWS (Sapwood of black locust - Summer) Robinia pseudoacacia cDNA, mRNA sequence.    50   0.11   1
BX936282|BX936282.10 Zebrafish DNA sequence from clone DKEY-202N8 in linkage group 4.    50   0.11   1
AL845267|AL845267.2 Mouse DNA sequence from clone RP23-426D2 on chromosome 2.    50   0.11   1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   0.19   14
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   0.19   10
AL590012|AL590012.6 Human DNA sequence from clone RP11-40I8 on chromosome X.    44   0.26   5
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   0.29   7
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   0.42   19
dna update 2006. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K67) RecName: Full=Alpha-mannosidase G;          EC=3.2.1.24;     335   1e-90
AJ851692_1(AJ851692|pid:none) Gallus gallus mRNA for hypothetica...   114   5e-24
AK294892_1(AK294892|pid:none) Homo sapiens cDNA FLJ57925 complet...   112   3e-23
(Q9NTJ4) RecName: Full=Alpha-mannosidase 2C1;          EC=3.2.1....   112   3e-23
CR859257_1(CR859257|pid:none) Pongo abelii mRNA; cDNA DKFZp459I1...   112   3e-23
BC105160_1(BC105160|pid:none) Bos taurus mannosidase, alpha, cla...   111   4e-23
AF044414_1(AF044414|pid:none) Homo sapiens alpha mannosidase 6A8...   111   5e-23
AK171110_1(AK171110|pid:none) Mus musculus NOD-derived CD11c +ve...   109   2e-22
AK049370_1(AK049370|pid:none) Mus musculus ES cells cDNA, RIKEN ...   109   2e-22
(Q91W89) RecName: Full=Alpha-mannosidase 2C1;          EC=3.2.1....   109   2e-22
protein update 2009. 4.16
PSORT 

 psg: 0.44  gvh: 0.39  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHD293 is nuc
5' end seq. ID SHD293F
5' end seq. 
>SHD293F.Seq
ATTTTTTATTTTTCTATTTTAATAAAATTTATAATAATAATATTTATTTATTTTTTTATT
TTTCTATTTTAGTAAAATAAAAACAATAATAAACAAAAATGACATCTGGTAATGTAATGT
TAAAACATCAAGATGTTACAATTGAAAGAATTGAAAAATTTCTTAGTGATACCTATTTCG
TAAGAGAAAACCTTTATGGAAAATTAATTTCTTTAAAATCATCAGAAGCTGTAAAAGTTA
AAGTATCTCCAAAAGTTGAAGGAATTTCTTATAAAGATGCAATTCAACTTGAATATAAAG
ATACAAAGATTGGAGAATCATTTGGACCATCATGGACAAATTATTGGTTTAAAGTTACAA
TTGACGTACCAACTGATTGGAAAGATAAAACTATTCATTTCATTTGGAATTCATCTTGTG
AAGGTTTAATTTGGATGAATGGTATTGCAATTCAAGGTTTAATTGGTGGAACATGGCAAG
ATTTAAGAGAAGAATATAAATTAATTGAAAATTCAAAAGGTGGAGAACATTTTGAATTTT
ATATTGAAATTTCATGTAATGGTATGTTTGGAGTTGGTNNNNNNNNNN
Length of 5' end seq. 588
3' end seq. ID SHD293Z
3' end seq. 
>SHD293Z.Seq
NNNNNNNNNNGTTTATCATTACTAAGATCNCCAAAATCNCCCGATGATACTTGTGANANG
GGTTTTCATAAATTCNCCTACTCAATTTATCCACATNGTGGTTCACTTCAATTTGCCTCC
GTCATTAAANAAGGNTATTCATTAAATAATAACTTTTANATCAGTGAAACNCCATTTTNT
TTAGNTTTTACAACTCANATCGATAAAACTTTTATTTCAACAAATAAANAAGCCATCATT
GNTGANACAATTAAAAAAGCTGAANATGGCNCCTCTTTTGTTGNGNGNGNTTANGAATNT
TTTGGTGGNGCCNCTACTTTTAACTTTACATNTTCAATCCTTCCAATTCCATTCAAATCA
ATCATTGAANGTAANGGTNTTGAANAAGTTAATCAATTTTCAAAATTTTATAAATTTAAT
GATACAATTAAAATTAATCCNTTTGAAATCAAAACTTTTANATTTATTTCAAATTAAAAA
TTAAAAATAAAATTAATAAATAAATATAAAAATAAATTTTAACNATAATAATAATAATAG
TTTTTTCAAAACAAAAAAAAAAAGAAATAATAAAATAAAATTTA
Length of 3' end seq. 584
Connected seq. ID SHD293P
Connected seq. 
>SHD293P.Seq
ATTTTTTATTTTTCTATTTTAATAAAATTTATAATAATAATATTTATTTATTTTTTTATT
TTTCTATTTTAGTAAAATAAAAACAATAATAAACAAAAATGACATCTGGTAATGTAATGT
TAAAACATCAAGATGTTACAATTGAAAGAATTGAAAAATTTCTTAGTGATACCTATTTCG
TAAGAGAAAACCTTTATGGAAAATTAATTTCTTTAAAATCATCAGAAGCTGTAAAAGTTA
AAGTATCTCCAAAAGTTGAAGGAATTTCTTATAAAGATGCAATTCAACTTGAATATAAAG
ATACAAAGATTGGAGAATCATTTGGACCATCATGGACAAATTATTGGTTTAAAGTTACAA
TTGACGTACCAACTGATTGGAAAGATAAAACTATTCATTTCATTTGGAATTCATCTTGTG
AAGGTTTAATTTGGATGAATGGTATTGCAATTCAAGGTTTAATTGGTGGAACATGGCAAG
ATTTAAGAGAAGAATATAAATTAATTGAAAATTCAAAAGGTGGAGAACATTTTGAATTTT
ATATTGAAATTTCATGTAATGGTATGTTTGGAGTTGGT----------GTTTATCATTAC
TAAGATCNCCAAAATCNCCCGATGATACTTGTGANANGGGTTTTCATAAATTCNCCTACT
CAATTTATCCACATNGTGGTTCACTTCAATTTGCCTCCGTCATTAAANAAGGNTATTCAT
TAAATAATAACTTTTANATCAGTGAAACNCCATTTTNTTTAGNTTTTACAACTCANATCG
ATAAAACTTTTATTTCAACAAATAAANAAGCCATCATTGNTGANACAATTAAAAAAGCTG
AANATGGCNCCTCTTTTGTTGNGNGNGNTTANGAATNTTTTGGTGGNGCCNCTACTTTTA
ACTTTACATNTTCAATCCTTCCAATTCCATTCAAATCAATCATTGAANGTAANGGTNTTG
AANAAGTTAATCAATTTTCAAAATTTTATAAATTTAATGATACAATTAAAATTAATCCNT
TTGAAATCAAAACTTTTANATTTATTTCAAATTAAAAATTAAAAATAAAATTAATAAATA
AATATAAAAATAAATTTTAACNATAATAATAATAATAGTTTTTTCAAAACAAAAAAAAAA
AGAAATAATAAAATAAAATTTA
Length of connected seq. 1152
Full length Seq ID -
Full length Seq. -
Length of full length seq. -