>SHD287 (SHD287Q) /CSM/SH/SHD2-D/SHD287Q.Seq.d/
TATGATATCAAGTTCTATGAGCTACAGACATAGTACAAATTCAGTGTACACACTGAACCC
ACATTTGAATATTCCAATTTCAACATCGACAACAATTCCACCAACTAGTTTTTATGCAAA
CAATACACCAGAAATGATTCAATCTCAAAGTGAAAATACCAATNCCAATAATATTAATAA
TAGCAGCAGCAATATXXXXXXXXXX

MISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNXNNINN
SSSN---

Frame A:
ydikfyelqt*ykfsvhteptfeysnfnidnnstn*flckqytrndsisk*kyqxq*y**
*qqq---


Frame B:
MISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNXNNINN
SSSN---


Frame C:
*yqvl*atdivqiqcth*thi*ifqfqhrqqfhqlvfmqtihqk*fnlkvkipxpiilii
aaai---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD287 (SHD287Q) /CSM/SH/SHD2-D/SHD287Q.Seq.d/                        381   e-105
CHL142 (CHL142Q) /CSM/CH/CHL1-B/CHL142Q.Seq.d/                        127   7e-29
SSK387 (SSK387Q) /CSM/SS/SSK3-D/SSK387Q.Seq.d/                         46   2e-04
SSB382 (SSB382Q) /CSM/SS/SSB3-D/SSB382Q.Seq.d/                         46   2e-04
SFK764 (SFK764Q) /CSM/SF/SFK7-C/SFK764Q.Seq.d/                         40   0.012
AHK870 (AHK870Q) /CSM/AH/AHK8-C/AHK870Q.Seq.d/                         40   0.012
AHD359 (AHD359Q) /CSM/AH/AHD3-C/AHD359Q.Seq.d/                         40   0.012
VSI562 (VSI562Q) /CSM/VS/VSI5-C/VSI562Q.Seq.d/                         36   0.19
VSI350 (VSI350Q) /CSM/VS/VSI3-C/VSI350Q.Seq.d/                         36   0.19
VSH676 (VSH676Q) /CSM/VS/VSH6-D/VSH676Q.Seq.d/                         36   0.19

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38197|U38197.1 Dictyostelium discoideum protein tyrosine phosphatase (PTP3) mRNA, complete cds.   379   e-101  1
AC026491|AC026491.3 Homo sapiens chromosome 12 clone RP11-389H22 map 12, WORKING DRAFT SEQUENCE, 18 unordered pieces.    50   0.011  3
BE005627|BE005627.1 RC2-BN0120-240300-011-f08 BN0120 Homo sapiens cDNA, mRNA sequence.    50   0.017  1
AC078887|AC078887.9 Homo sapiens chromosome 12 clone RP11-137K21, WORKING DRAFT SEQUENCE, 11 unordered pieces.    50   0.017  1
AC078879|AC078879.7 Homo sapiens chromosome 12 clone RP11-720H1, WORKING DRAFT SEQUENCE, 8 unordered pieces.    50   0.017  1
AC136337|AC136337.5 Mus musculus chromosome 16 clone RP24-85D15 map 16, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    50   0.017  1
AC129539|AC129539.11 Mus musculus chromosome 16, clone RP23-246B24, complete sequence.    50   0.017  1
AC078983|AC078983.17 Homo sapiens 12q BAC RP11-473M14 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    50   0.017  1
DN307050|DN307050.1 PL05012B2H02 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 3', mRNA sequence.    48   0.069  1
DN299510|DN299510.1 PL04016A2B03 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    48   0.069  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38197_1(U38197|pid:none) Dictyostelium discoideum protein tyros...    69   5e-11
(P54637) RecName: Full=Tyrosine-protein phosphatase 3;          ...    69   5e-11

 psg: 0.82  gvh: 0.32  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SHD287 is mit

>SHD287F.Seq
TATGATATCAAGTTCTATGAGCTACAGACATAGTACAAATTCAGTGTACACACTGAACCC
ACATTTGAATATTCCAATTTCAACATCGACAACAATTCCACCAACTAGTTTTTATGCAAA
CAATACACCAGAAATGATTCAATCTCAAAGTGAAAATACCAATNCCAATAATATTAATAA
TAGCAGCAGCAATATNNNNNNNNNN