AFJ139
Library AF
(Link to library)
Clone ID AFJ139
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14919-1
Original site URL
Representative seq. ID AFJ139P
(Link to Original site)
Representative DNA sequence
>AFJ139 (AFJ139Q) /CSM/AF/AFJ1-B/AFJ139Q.Seq.d/
TGGCCTACTGGACTCACACAAGTAATTATATAATATACATATACATATAAAATGGGTTCA
GTATCAGGTAATACACCATTAAAAGAAGTTGATAATGAAATCTTTGAATTAATGAATAGA
GAAAAAGATAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATCAAGA
GCAGTTATGGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCCAGGT
TCAAGATATTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAAGAGA
GCATTAAAAGCATTCCGTTTGGATGAGAGTAAATGGGGTGTTAATGTTCAACCATACAGT
GGTAGTCCAGCCAATTTCGCAGTTTACACAGCATTATTAAGACCACACGATCGTATAATG
GGTTTAGATTTACCATCAGGTGGTCATTTAACTCATGGTTATCAAACCGATAAGAAGAAG
ATTTCAGCATCATCAATCTTTTTCGAATCAATGCCATATCAAATTGGTGCTGATGGTTTA
ATCGATTATCAACGTXXXXXXXXXXCTTATTTAATGTGTGATATGGCTCATTACAGTGGT
TTAGTAGCTGCTCAATTATTGGATTCACCATTCGATTATTGTGATGTTGTCACCAGTACC
ACTCATAAAACCTTAAGAGGACCACGTTCCAGGAATCATCTTCTTTAGAAGAGGTAAAAG
AGTCGATGGTAATGGTAAAGAAATTGAAGAGTACGACATTGAATCAAAGATCAATTTCGC
AGTTTTCCCATCACTCCAAGGTGGTCCACATGAAAATGTTATTGCTGGTGTTGCTGTTGC
TCTCAAAGAAGCCGACTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGC
CGCTGCCATTGGTAATGCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGA
CAATCATTTAATTCTTTGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAA
AGCTGCCGATATCGCTAATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGC
AATTTCACCAGGTGGTATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGA
AGCCGATTTTGAAAAGATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAAT
TCAAGGTCGTGTCGGTAAGAAATTGGTTGATTTTGTTGTTAAATTAATAAATCAAAAGAA
TTATTAGATTTACGTAAAGAAGTNAAGAATTCTCTTCAAAATTCACTTACCAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
wptgltqvii*YTYTYKMGSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSR
AVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYS
GSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADGL
IDYQR---

---YLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSRNHLL*kr*ksrw*w*
rn*rvrh*ikdqfrsfpitprwst*kcycwccccsqrsrlsriqrvcpss*kecrchw*c
sheqrl*igykwy*qsfnslgfktkgthw**i*kscryr*yhrq*kcrpw*yqcnftrwy
sywficshk*rfkgsrf*kdc*fp**nrfnls*nsrscr*eig*fcc*inkskelldlrk
evknslqnslt


Translated Amino Acid sequence (All Frames)
Frame A:
wptgltqvii*YTYTYKMGSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSR
AVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYS
GSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADGL
IDYQR---

---li*cviwlitvv**llnywihhsiivmlspvplikp*edhvpgiiffrrgkrvdgng
keieeydieskinfavfpslqggphenviagvavalkeadsqefkeyalqvkknaaaign
almnkgyklvtngtdnhlilwdlrpkeltgnkfekaadianitvnknavhgdtnaispgg
irigssaltsrglkeadfekiadfldrivsisleiqgrvgkklvdfvvklinqkny*iyv
kkxrilfkihlp

Frame B:
glldshk*lynihihikwvqyqvihh*kklimksln**iekkidnlkv*n*lplkilhqe
qlwkh*dhilqinmqkviqvqdimvvqkllmn*klfvkreh*khsvwmrvngvlmfnhtv
vvqpisqftqhy*dhtiv*wv*iyhqvvi*lmvikpirrrfqhhqsfsnqchiklvlmv*
siin---

---lfnv*ygslqwfsscsiigftirll*cchqyhs*nlkrttfqesssleevkesmvmv
kklksttlnqrsisqfshhskvvhmkmlllvllllskkptlknsksmpfklkrmplplvm
ls*tkvinwlqmvltii*ffgi*dqrnslvinlkklpislispsikmpsmvipmqfhqvv
fvlvhllsqvev*rkpilkrllisliesfqsllkfkvvsvrnwlillln**ikriirft*
rsxefsskftyq

Frame C:
aywthtsnyiiyiyi*ngfsir*ytikrs***nl*ine*rkr*ti*rfrincl*kfyiks
sygsiritfyk*icrrlsrfkilwwyrsc**irnslskesiksipfg*e*mgc*cstiqw
*ssqfrslhsiikttrsyngfrftirwsfnswlsnr*eedfsiinlfrinaisnwc*wfn
rlst---

---YLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSRNHLL*kr*ksrw*w*
rn*rvrh*ikdqfrsfpitprwst*kcycwccccsqrsrlsriqrvcpss*kecrchw*c
sheqrl*igykwy*qsfnslgfktkgthw**i*kscryr*yhrq*kcrpw*yqcnftrwy
sywficshk*rfkgsrf*kdc*fp**nrfnls*nsrscr*eig*fcc*inkskelldlrk
evknslqnslt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ139 (AFJ139Q) /CSM/AF/AFJ1-B/AFJ139Q.Seq.d/ 2537 0.0
VFJ711 (VFJ711Q) /CSM/VF/VFJ7-A/VFJ711Q.Seq.d/ 1463 0.0
VFO614 (VFO614Q) /CSM/VF/VFO6-A/VFO614Q.Seq.d/ 1439 0.0
AFK584 (AFK584Q) /CSM/AF/AFK5-D/AFK584Q.Seq.d/ 1425 0.0
VFG867 (VFG867Q) /CSM/VF/VFG8-C/VFG867Q.Seq.d/ 1423 0.0
CFJ182 (CFJ182Q) /CSM/CF/CFJ1-D/CFJ182Q.Seq.d/ 1423 0.0
CFF296 (CFF296Q) /CSM/CF/CFF2-D/CFF296Q.Seq.d/ 1423 0.0
CFC685 (CFC685Q) /CSM/CF/CFC6-D/CFC685Q.Seq.d/ 1423 0.0
SFD348 (SFD348Q) /CSM/SF/SFD3-B/SFD348Q.Seq.d/ 1421 0.0
CFC879 (CFC879Q) /CSM/CF/CFC8-D/CFC879Q.Seq.d/ 1421 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF009966|AF009966.1 Candida albicans serine hydroxymethyl transferase II (SHMII) gene, complete cds. 58 6e-22 7
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4. 58 3e-19 20
AL409075|AL409075.1 T7 end of clone AV0AA012E03 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 44 1e-14 6
BI418085|BI418085.1 LjNEST24d6r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence. 60 2e-13 3
CB408430|CB408430.1 IPG006D12_249762 JH III-treated male I. pini midguts Ips pini cDNA clone IPG006D12 5, mRNA sequence. 62 3e-12 3
BP187516|BP187516.1 Dugesia japonica cDNA, clone: 00331_HN, expressed in the head. 52 7e-12 3
CV017773|CV017773.1 tbt_009554 Normalized Nicotiana tabacum cDNA library Nicotiana tabacum cDNA clone tbt_009554 5', mRNA sequence. 66 1e-11 2
BQ489771|BQ489771.1 14-E9425-006-009-K03-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone K-3-9, mRNA sequence. 50 1e-11 3
AF009965|AF009965.1 Candida albicans serine hydroxymethyl-transferase I (SHM1) gene, complete cds. 38 1e-11 7
AL408772|AL408772.1 T7 end of clone AV0AA010F02 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 58 1e-10 3
dna update 2004. 9.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT070546_1(BT070546|pid:none) Picea sitchensis clone WS02735_F19... 287 e-138
EF150642_1(EF150642|pid:none) Populus tremuloides serine hydroxy... 280 e-137
CS497860_1(CS497860|pid:none) Sequence 133 from Patent WO2007011... 285 e-137
CS497866_1(CS497866|pid:none) Sequence 139 from Patent WO2007011... 284 e-136
CS497762_1(CS497762|pid:none) Sequence 35 from Patent WO20070117... 284 e-136
EF150637_1(EF150637|pid:none) Populus tremuloides serine hydroxy... 281 e-135
CS497858_1(CS497858|pid:none) Sequence 131 from Patent WO2007011... 280 e-135
CS497758_1(CS497758|pid:none) Sequence 31 from Patent WO20070117... 282 e-134
CS497862_1(CS497862|pid:none) Sequence 135 from Patent WO2007011... 283 e-134
AF361589_1(AF361589|pid:none) Arabidopsis thaliana AT4g13930/dl3... 276 e-134
protein update 2009. 4.23
PSORT

psg: 0.81 gvh: 0.40 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for AFJ139 is cyt

5' end seq. ID AFJ139F
5' end seq.
>AFJ139F.Seq
TGGCCTACTGGACTCACACAAGTAATTATATAATATACATATACATATAAAATGGGTTCA
GTATCAGGTAATACACCATTAAAAGAAGTTGATAATGAAATCTTTGAATTAATGAATAGA
GAAAAAGATAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATCAAGA
GCAGTTATGGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCCAGGT
TCAAGATATTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAAGAGA
GCATTAAAAGCATTCCGTTTGGATGAGAGTAAATGGGGTGTTAATGTTCAACCATACAGT
GGTAGTCCAGCCAATTTCGCAGTTTACACAGCATTATTAAGACCACACGATCGTATAATG
GGTTTAGATTTACCATCAGGTGGTCATTTAACTCATGGTTATCAAACCGATAAGAAGAAG
ATTTCAGCATCATCAATCTTTTTCGAATCAATGCCATATCAAATTGGTGCTGATGGTTTA
ATCGATTATCAACGT----------
Length of 5' end seq. 555
3' end seq. ID AFJ139Z
3' end seq.
>AFJ139Z.Seq
----------CTTATTTAATGTGTGATATGGCTCATTACAGTGGTTTAGTAGCTGCTCAA
TTATTGGATTCACCATTCGATTATTGTGATGTTGTCACCAGTACCACTCATAAAACCTTA
AGAGGACCACGTTCCAGGAATCATCTTCTTTAGAAGAGGTAAAAGAGTCGATGGTAATGG
TAAAGAAATTGAAGAGTACGACATTGAATCAAAGATCAATTTCGCAGTTTTCCCATCACT
CCAAGGTGGTCCACATGAAAATGTTATTGCTGGTGTTGCTGTTGCTCTCAAAGAAGCCGA
CTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGCCGCTGCCATTGGTAA
TGCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGACAATCATTTAATTCT
TTGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAAAGCTGCCGATATCGC
TAATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGCAATTTCACCAGGTGG
TATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGAAGCCGATTTTGAAAA
GATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAATTCAAGGTCGTGTCGG
TAAGAAATTGGTTGATTTTGTTGTTAAATTAATAAATCAAAAGAATTATTAGATTTACGT
AAAGAAGTNAAGAATTCTCTTCAAAATTCACTTACCAG
Length of 3' end seq. 748
Connected seq. ID AFJ139P
Connected seq.
>AFJ139P.Seq
TGGCCTACTGGACTCACACAAGTAATTATATAATATACATATACATATAAAATGGGTTCA
GTATCAGGTAATACACCATTAAAAGAAGTTGATAATGAAATCTTTGAATTAATGAATAGA
GAAAAAGATAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATCAAGA
GCAGTTATGGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCCAGGT
TCAAGATATTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAAGAGA
GCATTAAAAGCATTCCGTTTGGATGAGAGTAAATGGGGTGTTAATGTTCAACCATACAGT
GGTAGTCCAGCCAATTTCGCAGTTTACACAGCATTATTAAGACCACACGATCGTATAATG
GGTTTAGATTTACCATCAGGTGGTCATTTAACTCATGGTTATCAAACCGATAAGAAGAAG
ATTTCAGCATCATCAATCTTTTTCGAATCAATGCCATATCAAATTGGTGCTGATGGTTTA
ATCGATTATCAACGT----------CTTATTTAATGTGTGATATGGCTCATTACAGTGGT
TTAGTAGCTGCTCAATTATTGGATTCACCATTCGATTATTGTGATGTTGTCACCAGTACC
ACTCATAAAACCTTAAGAGGACCACGTTCCAGGAATCATCTTCTTTAGAAGAGGTAAAAG
AGTCGATGGTAATGGTAAAGAAATTGAAGAGTACGACATTGAATCAAAGATCAATTTCGC
AGTTTTCCCATCACTCCAAGGTGGTCCACATGAAAATGTTATTGCTGGTGTTGCTGTTGC
TCTCAAAGAAGCCGACTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGC
CGCTGCCATTGGTAATGCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGA
CAATCATTTAATTCTTTGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAA
AGCTGCCGATATCGCTAATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGC
AATTTCACCAGGTGGTATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGA
AGCCGATTTTGAAAAGATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAAT
TCAAGGTCGTGTCGGTAAGAAATTGGTTGATTTTGTTGTTAAATTAATAAATCAAAAGAA
TTATTAGATTTACGTAAAGAAGTNAAGAATTCTCTTCAAAATTCACTTACCAG
Length of connected seq. 1303
Full length Seq ID -
Full length Seq. -
Length of full length seq. -