SHD277
Library SH
(Link to library)
Clone ID SHD277
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID SHD277P
(Link to Original site)
Representative DNA sequence
>SHD277 (SHD277Q) /CSM/SH/SHD2-D/SHD277Q.Seq.d/
GAAAGAAAGAATACTCCAAAAGATCGTAACTACGGTTACCTTCTGTAAGGAGTGCCCGAA
TCATGAGAACTCTGTTTCGAAAGGATTTGCGGTTGAGCACCTAGAATGGGACCCGAAAGG
TTGTGAACTATGCCTGAGGAAGGCGAAGTCAGGGGAAACTCTGATGGAGGCTTGTCGCAA
TGCTGACGTGCAAATCGCTTGTCTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAAC
CTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCA
TCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAAC
TCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAAATTAAATTGCACAT
GTGCAATGNGAAAAATAGGAGCTCTTAGTGGGCCATTTTTAGGTAAGCAGAACTGGCGAT
GTGGGTTGAACCAAATATTGGGATAAGXXXXXXXXXXTGTTAAAAGATAACGCAAGTGTC
CAAAGGCAGGCTCAGTGAGAACAGAAATCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTT
GATTCTGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTG
CTTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCA
GCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTG
TGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGT
TTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGT
AGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGA
CAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAA
TCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGT
TGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGT
TTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAAC
TCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCG
sequence update 2002.10.25
Translated Amino Acid sequence
kerilqkivttvtfckecpnhensvskgfavehlewdpkgcelclrkaksgetlmeacrn
advqiacltwv*grktnrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqt
lngwvsf*ft*ldfkiklhmcnxknrss*waifr*AELAMWVEPNIGI---

---LKDNASVQRQAQ*eqkshve*kgkslldsdfqy*selgnqglsilyvlks*a*rcqk
syhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fy
ptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcf
rv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn
*vl*ase*


Translated Amino Acid sequence (All Frames)
Frame A:
erkntpkdrnygyll*gvpes*elcfericg*aprmgperl*tmpeegevrgnsdgglsq
c*ranrlsnlgigakd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsn
servgiilihligf*n*iahvqxek*ellvghf*vsrtgdvg*tkywdk---

---c*kitqvskgrlsenrnlt*skrakaclilifstnrnwetrayrsfmclnlkprgvr
kvttgitglwqpsahsdaaf*sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsf
tlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpna
lececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*
trccklpss

Frame B:
kerilqkivttvtfckecpnhensvskgfavehlewdpkgcelclrkaksgetlmeacrn
advqiacltwv*grktnrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqt
lngwvsf*ft*ldfkiklhmcnxknrss*waifr*AELAMWVEPNIGI---

---vkr*rkcpkagsvrteisrrvkgqkpa*f*fsvligtgkpgpidplca*ilslevse
klpqg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrps*drlvl
pyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml
*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsne
lgavsfrva

Frame C:
kkeyskrs*lrlpsvrsarimrtlfrkdlrlst*ngtrkvvnya*grrsqgkl*wrlvam
ltckslv*lgyrgerlieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl
*tggyhfnslnwilklnctcamxkigalsgpflgkqnwrcglnqilg*---

---LKDNASVQRQAQ*eqkshve*kgkslldsdfqy*selgnqglsilyvlks*a*rcqk
syhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fy
ptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcf
rv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn
*vl*ase*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD277 (SHD277Q) /CSM/SH/SHD2-D/SHD277Q.Seq.d/ 2424 0.0
VHK648 (VHK648Q) /CSM/VH/VHK6-B/VHK648Q.Seq.d/ 1465 0.0
VHA301 (VHA301Q) /CSM/VH/VHA3-A/VHA301Q.Seq.d/ 1465 0.0
SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/ 1465 0.0
VHK846 (VHK846Q) /CSM/VH/VHK8-B/VHK846Q.Seq.d/ 1451 0.0
VHD131 (VHD131Q) /CSM/VH/VHD1-B/VHD131Q.Seq.d/ 1451 0.0
CHL330 (CHL330Q) /CSM/CH/CHL3-B/CHL330Q.Seq.d/ 1451 0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/ 1447 0.0
AHD793 (AHD793Q) /CSM/AH/AHD7-D/AHD793Q.Seq.d/ 1447 0.0
VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/ 1445 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1465 0.0 1
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 1449 0.0 1
DQ340386|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 946 0.0 5
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 833 0.0 5
DQ340387|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence. 557 0.0 7
DQ340388|DQ340388.1 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 379 0.0 8
DQ340389|DQ340389.1 Dictyostelium fasciculatum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 341 0.0 8
AJ271113|AJ271113.1 Marchantia polymorpha 25S rRNA gene. 347 0.0 9
AY342318|AY342318.1 Marchantia polymorpha 5S ribosomal RNA and 18S ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence. 347 0.0 9
AY342317|AY342317.1 Marchantia polymorpha chromosome X 5S ribosomal RNA and 18S ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence. 347 0.0 9
dna update 2006. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP... 140 1e-31
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo... 125 3e-27
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence... 124 9e-27
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p... 86 2e-15
AY810980_1(AY810980|pid:none) Schistosoma japonicum clone SJCHGC... 81 8e-14
AP005527_26(AP005527|pid:none) Oryza sativa Japonica Group genom... 60 1e-11
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ... 73 2e-11
EF091847_1(EF091847|pid:none) Lilium longiflorum hypothetical pr... 71 7e-11
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704... 68 7e-10
AM450957_5(AM450957|pid:none) Vitis vinifera contig VV78X196950.... 57 1e-06
protein update 2009. 4.16
PSORT

psg: 0.75 gvh: 0.17 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SHD277 is nuc

5' end seq. ID SHD277F
5' end seq.
>SHD277F.Seq
GAAAGAAAGAATACTCCAAAAGATCGTAACTACGGTTACCTTCTGTAAGGAGTGCCCGAA
TCATGAGAACTCTGTTTCGAAAGGATTTGCGGTTGAGCACCTAGAATGGGACCCGAAAGG
TTGTGAACTATGCCTGAGGAAGGCGAAGTCAGGGGAAACTCTGATGGAGGCTTGTCGCAA
TGCTGACGTGCAAATCGCTTGTCTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAAC
CTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCA
TCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAAC
TCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAAATTAAATTGCACAT
GTGCAATGNGAAAAATAGGAGCTCTTAGTGGGCCATTTTTAGGTAAGCAGAACTGGCGAT
GTGGGTTGAACCAAATATTGGGATAAGNNNNNNNNNN
Length of 5' end seq. 517
3' end seq. ID SHD277Z
3' end seq.
>SHD277Z.Seq
NNNNNNNNNNTGTTAAAAGATAACGCAAGTGTCCAAAGGCAGGCTCAGTGAGAACAGAAA
TCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAA
CTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAG
AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTT
TTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGAT
TGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTT
TACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGT
CATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCC
GTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGC
TTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTT
AAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGC
TAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATG
AACTAGGTGCTGTAAGCTTCCGAGTAGCG
Length of 3' end seq. 749
Connected seq. ID SHD277P
Connected seq.
>SHD277P.Seq
GAAAGAAAGAATACTCCAAAAGATCGTAACTACGGTTACCTTCTGTAAGGAGTGCCCGAA
TCATGAGAACTCTGTTTCGAAAGGATTTGCGGTTGAGCACCTAGAATGGGACCCGAAAGG
TTGTGAACTATGCCTGAGGAAGGCGAAGTCAGGGGAAACTCTGATGGAGGCTTGTCGCAA
TGCTGACGTGCAAATCGCTTGTCTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAAC
CTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCA
TCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAAC
TCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAAATTAAATTGCACAT
GTGCAATGNGAAAAATAGGAGCTCTTAGTGGGCCATTTTTAGGTAAGCAGAACTGGCGAT
GTGGGTTGAACCAAATATTGGGATAAG----------TGTTAAAAGATAACGCAAGTGTC
CAAAGGCAGGCTCAGTGAGAACAGAAATCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTT
GATTCTGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTG
CTTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCA
GCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTG
TGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGT
TTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGT
AGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGA
CAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAA
TCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGT
TGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGT
TTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAAC
TCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCG
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -