>SHD269 (SHD269Q) /CSM/SH/SHD2-C/SHD269Q.Seq.d/
XXXXXXXXXXTNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAAATTAAAAAATAT

---XQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENN
EITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE
NEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQ
QENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQIKKY

Frame A:
---XQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENN
EITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE
NEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQ
QENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQIKKY


Frame B:
---fkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkim
klpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkr
mkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfn
krtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkiklkn


Frame C:
---srs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**
nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksn*ki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        805   0.0
SHJ524 (SHJ524Q) /CSM/SH/SHJ5-A/SHJ524Q.Seq.d/                        805   0.0
SHG406 (SHG406Q) /CSM/SH/SHG4-A/SHG406Q.Seq.d/                        805   0.0
SHG232 (SHG232Q) /CSM/SH/SHG2-B/SHG232Q.Seq.d/                        805   0.0
SHD878 (SHD878Q) /CSM/SH/SHD8-D/SHD878Q.Seq.d/                        805   0.0
SHD613 (SHD613Q) /CSM/SH/SHD6-A/SHD613Q.Seq.d/                        805   0.0
SHD492 (SHD492Q) /CSM/SH/SHD4-D/SHD492Q.Seq.d/                        805   0.0
SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/                        805   0.0
SHD269 (SHD269Q) /CSM/SH/SHD2-C/SHD269Q.Seq.d/                        805   0.0
SHD221 (SHD221Q) /CSM/SH/SHD2-A/SHD221Q.Seq.d/                        805   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   805   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.15   6
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence.    44   0.19   2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.26   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.26   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.26   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.26   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.26   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.26   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   305   8e-82
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    39   0.15
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    39   0.15
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.25
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    38   0.33
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    38   0.33
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.43
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.56
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   0.73
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   0.96

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHD269 is nuc

>SHD269Z.Seq
NNNNNNNNNNTNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAAATTAAAAAATAT